miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23852 5' -53.8 NC_005261.1 + 31440 0.7 0.813801
Target:  5'- uGGCGGCgCCGccCGGCGAGGACGAgCGc -3'
miRNA:   3'- -UUGUUGaGGCu-GCUGCUCCUGCU-GCu -5'
23852 5' -53.8 NC_005261.1 + 5512 0.7 0.831092
Target:  5'- cGCGGCagCGGCGGCGAGGcCGcCGGc -3'
miRNA:   3'- uUGUUGagGCUGCUGCUCCuGCuGCU- -5'
23852 5' -53.8 NC_005261.1 + 76554 0.7 0.831092
Target:  5'- uACGGCaUgGGCGACGAGGGCGAg-- -3'
miRNA:   3'- uUGUUGaGgCUGCUGCUCCUGCUgcu -5'
23852 5' -53.8 NC_005261.1 + 40665 0.7 0.839463
Target:  5'- cAGCAGCUCCG-CGACGccgucgGGGAgcCGGCGc -3'
miRNA:   3'- -UUGUUGAGGCuGCUGC------UCCU--GCUGCu -5'
23852 5' -53.8 NC_005261.1 + 76448 0.7 0.839463
Target:  5'- gGACGcGC-CCGACGGCGAcGGCGGCGc -3'
miRNA:   3'- -UUGU-UGaGGCUGCUGCUcCUGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 42172 0.7 0.839463
Target:  5'- aAGCGAg-CCGugGACGcAGGGCG-CGAg -3'
miRNA:   3'- -UUGUUgaGGCugCUGC-UCCUGCuGCU- -5'
23852 5' -53.8 NC_005261.1 + 128872 0.69 0.847641
Target:  5'- ---cGCUgCCGACGACGAGG-CGGgGGc -3'
miRNA:   3'- uuguUGA-GGCUGCUGCUCCuGCUgCU- -5'
23852 5' -53.8 NC_005261.1 + 135124 0.71 0.786617
Target:  5'- cGCGuCUCCGcagcGCGGCGGGGGaGACGAc -3'
miRNA:   3'- uUGUuGAGGC----UGCUGCUCCUgCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 109107 0.71 0.786617
Target:  5'- --gGACgCCGGCcAUGAGGGCGGCGGu -3'
miRNA:   3'- uugUUGaGGCUGcUGCUCCUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 95085 0.71 0.767767
Target:  5'- cGCGAC-CgCGACGGCGAGGcCGAUGc -3'
miRNA:   3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 56165 0.72 0.698392
Target:  5'- cAGCGGCggggCCcGCGGgGAGGACGACGc -3'
miRNA:   3'- -UUGUUGa---GGcUGCUgCUCCUGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 22694 0.72 0.698392
Target:  5'- gGACgGGC-CCGGCGACGAGGcCGuCGAg -3'
miRNA:   3'- -UUG-UUGaGGCUGCUGCUCCuGCuGCU- -5'
23852 5' -53.8 NC_005261.1 + 135027 0.72 0.698392
Target:  5'- cGCGGC-CgCGGCGGCGAGGcCGACGc -3'
miRNA:   3'- uUGUUGaG-GCUGCUGCUCCuGCUGCu -5'
23852 5' -53.8 NC_005261.1 + 261 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 297 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 88285 0.72 0.718641
Target:  5'- gGACGACgaCGGCGGCGccAGcGACGACGAa -3'
miRNA:   3'- -UUGUUGagGCUGCUGC--UC-CUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 137944 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 137980 0.72 0.718641
Target:  5'- cGGCGGCUgCGGCGGCGGcuGcGGCGGCGGc -3'
miRNA:   3'- -UUGUUGAgGCUGCUGCU--C-CUGCUGCU- -5'
23852 5' -53.8 NC_005261.1 + 5998 0.71 0.758151
Target:  5'- cGCucCUCCcGCGGCGAGGGCuccGGCGAg -3'
miRNA:   3'- uUGuuGAGGcUGCUGCUCCUG---CUGCU- -5'
23852 5' -53.8 NC_005261.1 + 117597 0.71 0.758151
Target:  5'- -uCGAUccugCCGACGAUGAcGACGACGAc -3'
miRNA:   3'- uuGUUGa---GGCUGCUGCUcCUGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.