miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 3' -52.6 NC_005261.1 + 23309 1.12 0.003785
Target:  5'- cCCGUAUGGCCGAGCAGAAAGAAGCCGa -3'
miRNA:   3'- -GGCAUACCGGCUCGUCUUUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 128122 0.77 0.493091
Target:  5'- -gGUcgGGCCGAguGCGGAGAGAGGCg- -3'
miRNA:   3'- ggCAuaCCGGCU--CGUCUUUCUUCGgc -5'
23853 3' -52.6 NC_005261.1 + 77218 0.75 0.594864
Target:  5'- cCCGc-UGGCCGGG-GGGGAGGAGCCa -3'
miRNA:   3'- -GGCauACCGGCUCgUCUUUCUUCGGc -5'
23853 3' -52.6 NC_005261.1 + 121791 0.75 0.605312
Target:  5'- gCCGgcgGGCUGGGCAGggGGcgcguGGCUGg -3'
miRNA:   3'- -GGCauaCCGGCUCGUCuuUCu----UCGGC- -5'
23853 3' -52.6 NC_005261.1 + 15930 0.74 0.647233
Target:  5'- gCCGg--GGCCGGGgccCGGgcAGGAGCCGg -3'
miRNA:   3'- -GGCauaCCGGCUC---GUCuuUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 16266 0.73 0.729868
Target:  5'- gCCGg--GGCCGGGCuucggcucgcccGGggGGgcGCCGu -3'
miRNA:   3'- -GGCauaCCGGCUCG------------UCuuUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 121711 0.73 0.739901
Target:  5'- gCGUAgacGCCGAcgGCgGGGGAGAAGCCGa -3'
miRNA:   3'- gGCAUac-CGGCU--CG-UCUUUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 32919 0.72 0.769368
Target:  5'- gCGUGgggGGCggCGGGCGGggGGggGgCGg -3'
miRNA:   3'- gGCAUa--CCG--GCUCGUCuuUCuuCgGC- -5'
23853 3' -52.6 NC_005261.1 + 35306 0.72 0.778946
Target:  5'- gCGccgGGCCGGGCuGcucGGGGAGGCCGg -3'
miRNA:   3'- gGCauaCCGGCUCGuC---UUUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 2570 0.71 0.815785
Target:  5'- gCGUGUGGuacuccCCGGGCGGcacgcggcGGAAGCCGc -3'
miRNA:   3'- gGCAUACC------GGCUCGUCuu------UCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 16395 0.71 0.82458
Target:  5'- gCCGUcgucGUcGCCGGGCGGugcgGGAGAGGCCc -3'
miRNA:   3'- -GGCA----UAcCGGCUCGUC----UUUCUUCGGc -5'
23853 3' -52.6 NC_005261.1 + 25163 0.71 0.840776
Target:  5'- cCCGgggcGGCCGAGCGGGuuGGAucacgugGGCCu -3'
miRNA:   3'- -GGCaua-CCGGCUCGUCUu-UCU-------UCGGc -5'
23853 3' -52.6 NC_005261.1 + 135196 0.7 0.849828
Target:  5'- gCGgagcAUGGCCGAggcggcGCAGAGGGccacGGCCGa -3'
miRNA:   3'- gGCa---UACCGGCU------CGUCUUUCu---UCGGC- -5'
23853 3' -52.6 NC_005261.1 + 34319 0.7 0.849828
Target:  5'- aCGgggaGGCCGAGgGGccccAAGggGCCGg -3'
miRNA:   3'- gGCaua-CCGGCUCgUCu---UUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 83033 0.7 0.85784
Target:  5'- cCCGggagGGCCGcucgccGCGGGAGGggGCUc -3'
miRNA:   3'- -GGCaua-CCGGCu-----CGUCUUUCuuCGGc -5'
23853 3' -52.6 NC_005261.1 + 119976 0.7 0.85784
Target:  5'- uCCGUcgagccccGGCCGAcGCuGGAGGgcGCCGg -3'
miRNA:   3'- -GGCAua------CCGGCU-CGuCUUUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 127021 0.7 0.85784
Target:  5'- gCGgc-GGcCCGAGCAGGGAGucGUCGa -3'
miRNA:   3'- gGCauaCC-GGCUCGUCUUUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 74406 0.7 0.865637
Target:  5'- cCCGUuuucGGCCGcgGGCGGGAG--GGCCGa -3'
miRNA:   3'- -GGCAua--CCGGC--UCGUCUUUcuUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 94697 0.7 0.873214
Target:  5'- aCCGaggacGUGGCCGAGCu---GGAGcGCCGc -3'
miRNA:   3'- -GGCa----UACCGGCUCGucuuUCUU-CGGC- -5'
23853 3' -52.6 NC_005261.1 + 21160 0.7 0.880564
Target:  5'- aCGgcccuGCCGAGCAGAGAuGcAGCCGc -3'
miRNA:   3'- gGCauac-CGGCUCGUCUUU-CuUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.