miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23853 3' -52.6 NC_005261.1 + 25163 0.71 0.840776
Target:  5'- cCCGgggcGGCCGAGCGGGuuGGAucacgugGGCCu -3'
miRNA:   3'- -GGCaua-CCGGCUCGUCUu-UCU-------UCGGc -5'
23853 3' -52.6 NC_005261.1 + 27368 0.67 0.949798
Target:  5'- aCCGgcgcgaGGCCGgugGGCAGggGGuacgcGGCCa -3'
miRNA:   3'- -GGCaua---CCGGC---UCGUCuuUCu----UCGGc -5'
23853 3' -52.6 NC_005261.1 + 27724 0.67 0.953958
Target:  5'- gCCGcg-GGagGAGCGGAgacgcgcgggcaGAGGAGCCGa -3'
miRNA:   3'- -GGCauaCCggCUCGUCU------------UUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 27817 0.67 0.95788
Target:  5'- gCCGgccGGCCGAGCuAGccAGccGAGCCa -3'
miRNA:   3'- -GGCauaCCGGCUCG-UCuuUC--UUCGGc -5'
23853 3' -52.6 NC_005261.1 + 28630 0.68 0.9253
Target:  5'- gCGcaugGUGGCCGcGGgGGAGAgugacGAGGCCGg -3'
miRNA:   3'- gGCa---UACCGGC-UCgUCUUU-----CUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 28800 0.66 0.968255
Target:  5'- -----cGGCCGcGGCGGAGGcagccgccgccGAAGCCGa -3'
miRNA:   3'- ggcauaCCGGC-UCGUCUUU-----------CUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 30828 0.69 0.91375
Target:  5'- cCCGgggacggGGCCGAGgAGGAGGAGGa-- -3'
miRNA:   3'- -GGCaua----CCGGCUCgUCUUUCUUCggc -5'
23853 3' -52.6 NC_005261.1 + 32061 0.67 0.959382
Target:  5'- ---cAUGGCCGcGCAGAgcGcggcgcuggggcucgGGGAGCCGg -3'
miRNA:   3'- ggcaUACCGGCuCGUCU--U---------------UCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 32919 0.72 0.769368
Target:  5'- gCGUGgggGGCggCGGGCGGggGGggGgCGg -3'
miRNA:   3'- gGCAUa--CCG--GCUCGUCuuUCuuCgGC- -5'
23853 3' -52.6 NC_005261.1 + 34319 0.7 0.849828
Target:  5'- aCGgggaGGCCGAGgGGccccAAGggGCCGg -3'
miRNA:   3'- gGCaua-CCGGCUCgUCu---UUCuuCGGC- -5'
23853 3' -52.6 NC_005261.1 + 35306 0.72 0.778946
Target:  5'- gCGccgGGCCGGGCuGcucGGGGAGGCCGg -3'
miRNA:   3'- gGCauaCCGGCUCGuC---UUUCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 38937 0.67 0.961566
Target:  5'- gCCGgc-GGCCGGGCGGGccGcGGCgCGc -3'
miRNA:   3'- -GGCauaCCGGCUCGUCUuuCuUCG-GC- -5'
23853 3' -52.6 NC_005261.1 + 46107 0.66 0.97667
Target:  5'- gCCGgg-GGCCGugguccgcguccAGCAGGucgccgcccGAGAAcGCCGa -3'
miRNA:   3'- -GGCauaCCGGC------------UCGUCU---------UUCUU-CGGC- -5'
23853 3' -52.6 NC_005261.1 + 48019 0.66 0.974072
Target:  5'- cCCGcc-GGCaGAGCAGGgcGAGGAGCaCGc -3'
miRNA:   3'- -GGCauaCCGgCUCGUCU--UUCUUCG-GC- -5'
23853 3' -52.6 NC_005261.1 + 48319 0.68 0.935847
Target:  5'- gCGUcgGGcCCGGGCucGGggGcgcgcgcggcGAGGCCGa -3'
miRNA:   3'- gGCAuaCC-GGCUCG--UCuuU----------CUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 49480 0.69 0.894564
Target:  5'- -----aGGCCGcGCGGAAgcugcagcagaGGAGGCCGg -3'
miRNA:   3'- ggcauaCCGGCuCGUCUU-----------UCUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 53583 0.67 0.961566
Target:  5'- gCCGcg-GGCCGgcggcgccccAGCGGAccGAcGAGGCCGu -3'
miRNA:   3'- -GGCauaCCGGC----------UCGUCU--UU-CUUCGGC- -5'
23853 3' -52.6 NC_005261.1 + 58298 0.67 0.961566
Target:  5'- gCCGgggGGCgCGGGgAGggGGcGGCCc -3'
miRNA:   3'- -GGCauaCCG-GCUCgUCuuUCuUCGGc -5'
23853 3' -52.6 NC_005261.1 + 60039 0.69 0.91375
Target:  5'- gCCGUcgGcGCCGAcggcgGCGGcGAAGAgcggcGGCCGg -3'
miRNA:   3'- -GGCAuaC-CGGCU-----CGUC-UUUCU-----UCGGC- -5'
23853 3' -52.6 NC_005261.1 + 62488 0.68 0.942634
Target:  5'- cCCGUugcagaGGUCGAacgggcccguguucuGCAGGAAGgcGCCGc -3'
miRNA:   3'- -GGCAua----CCGGCU---------------CGUCUUUCuuCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.