Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23856 | 3' | -58.9 | NC_005261.1 | + | 32922 | 0.72 | 0.374393 |
Target: 5'- uGGGGGGcggcGGgcggGGGGGGGGCGgGGAGg -3' miRNA: 3'- -UCCCUCua--UCa---CUCUCCCCGCgCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 90167 | 0.72 | 0.374393 |
Target: 5'- cGGGGAGGcGGaGGGGGGGGaCGgGGAGg -3' miRNA: 3'- -UCCCUCUaUCaCUCUCCCC-GCgCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 5320 | 0.72 | 0.382617 |
Target: 5'- aGGaGGGGGUAG-GGGAGaGGCGCGGGu -3' miRNA: 3'- -UC-CCUCUAUCaCUCUCcCCGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 24134 | 0.68 | 0.598287 |
Target: 5'- uGGGGGcugGGUGGGcGGGGCucaccugGCGGGAu -3' miRNA: 3'- uCCCUCua-UCACUCuCCCCG-------CGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 32969 | 0.69 | 0.52891 |
Target: 5'- cGGGAGGcGG-GAGAGGaGGgacCGCGGAGg -3' miRNA: 3'- uCCCUCUaUCaCUCUCC-CC---GCGCCUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 39718 | 0.69 | 0.527924 |
Target: 5'- aGGGGAGggGGUuuGGGGGGCgggugccccagucGCGGAu -3' miRNA: 3'- -UCCCUCuaUCAcuCUCCCCG-------------CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 92718 | 0.7 | 0.509321 |
Target: 5'- cGGGAGcgGGagcggGAGcGGGGCGgGGAc -3' miRNA: 3'- uCCCUCuaUCa----CUCuCCCCGCgCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 27236 | 0.7 | 0.490043 |
Target: 5'- aAGGGGGAggcgccuggGGUGGGGcGGGGUguGCGGGc -3' miRNA: 3'- -UCCCUCUa--------UCACUCU-CCCCG--CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 33010 | 0.7 | 0.480531 |
Target: 5'- cGGGGaAGggGG-GAGGGGGGCGCcGAu -3' miRNA: 3'- -UCCC-UCuaUCaCUCUCCCCGCGcCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 26815 | 0.71 | 0.461786 |
Target: 5'- aGGGGGGAaccugccugcucUGG-GAGGGGGGCgGUGGGc -3' miRNA: 3'- -UCCCUCU------------AUCaCUCUCCCCG-CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 5379 | 0.71 | 0.452558 |
Target: 5'- gGGGGAGggAGggaGGGAGGGagagcgagaGCGCGGGc -3' miRNA: 3'- -UCCCUCuaUCa--CUCUCCC---------CGCGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 7994 | 0.71 | 0.434411 |
Target: 5'- uGGGAGAggggGGaGAGGGGGGCuugagcgaGCGGGu -3' miRNA: 3'- uCCCUCUa---UCaCUCUCCCCG--------CGCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 11815 | 0.71 | 0.425497 |
Target: 5'- gAGGGGGAaAGaGAGuGGGGGCGgGGGc -3' miRNA: 3'- -UCCCUCUaUCaCUC-UCCCCGCgCCUu -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 57178 | 0.72 | 0.407138 |
Target: 5'- gAGGGAGuggGGUcggcgggaaggggGGGGGGGGCGCGcGGGu -3' miRNA: 3'- -UCCCUCua-UCA-------------CUCUCCCCGCGC-CUU- -5' |
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23856 | 3' | -58.9 | NC_005261.1 | + | 26324 | 1.06 | 0.001951 |
Target: 5'- aAGGGAGAUAGUGAGAGGGGCGCGGAAa -3' miRNA: 3'- -UCCCUCUAUCACUCUCCCCGCGCCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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