miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23856 5' -60.5 NC_005261.1 + 6912 0.73 0.283436
Target:  5'- gGUUCC-CCCCuccugcUCUCCUUCUCaUCCUCc -3'
miRNA:   3'- aCGAGGaGGGG------AGAGGGAGAG-AGGAG- -5'
23856 5' -60.5 NC_005261.1 + 10065 0.74 0.270587
Target:  5'- -uCUCCUCCCCUCUCCCU---UCCa- -3'
miRNA:   3'- acGAGGAGGGGAGAGGGAgagAGGag -5'
23856 5' -60.5 NC_005261.1 + 83970 0.74 0.26434
Target:  5'- cGCUUCUcCCCCUCUCCCcccCUUUCCc- -3'
miRNA:   3'- aCGAGGA-GGGGAGAGGGa--GAGAGGag -5'
23856 5' -60.5 NC_005261.1 + 5684 0.74 0.258211
Target:  5'- aGCUCCcUCCC-CUCCCUCUcCUCCcCg -3'
miRNA:   3'- aCGAGGaGGGGaGAGGGAGA-GAGGaG- -5'
23856 5' -60.5 NC_005261.1 + 25713 0.74 0.246302
Target:  5'- cGCUCaagccCCCCUCUCCCccCUCUCC-Ca -3'
miRNA:   3'- aCGAGga---GGGGAGAGGGa-GAGAGGaG- -5'
23856 5' -60.5 NC_005261.1 + 22299 0.76 0.193456
Target:  5'- cGCccgCCUCCuCCUCUCUCUCUUUCCcCg -3'
miRNA:   3'- aCGa--GGAGG-GGAGAGGGAGAGAGGaG- -5'
23856 5' -60.5 NC_005261.1 + 28049 0.79 0.126233
Target:  5'- aGCUUCUcCCCCUCUCCCUC-CUCgUUg -3'
miRNA:   3'- aCGAGGA-GGGGAGAGGGAGaGAGgAG- -5'
23856 5' -60.5 NC_005261.1 + 33212 0.8 0.105411
Target:  5'- -cCUCCcCCCCUCUCCCUCccccucccuccUCUCCUCc -3'
miRNA:   3'- acGAGGaGGGGAGAGGGAG-----------AGAGGAG- -5'
23856 5' -60.5 NC_005261.1 + 3190 0.8 0.100082
Target:  5'- -cCUCCUCCUC-CUCCCUCUcCUCCUCc -3'
miRNA:   3'- acGAGGAGGGGaGAGGGAGA-GAGGAG- -5'
23856 5' -60.5 NC_005261.1 + 582 0.81 0.081208
Target:  5'- cGCUCCUCCCCcCUCCCcCUCUgUUCg -3'
miRNA:   3'- aCGAGGAGGGGaGAGGGaGAGAgGAG- -5'
23856 5' -60.5 NC_005261.1 + 26363 1.08 0.001028
Target:  5'- aUGCUCCUCCCCUCUCCCUCUCUCCUCc -3'
miRNA:   3'- -ACGAGGAGGGGAGAGGGAGAGAGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.