miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 3' -54 NC_005261.1 + 83299 0.69 0.848634
Target:  5'- aCGGCugcgcgGGGUc-GUGcAGCUCGGGCGg -3'
miRNA:   3'- -GCCGuua---UCCGucUAC-UCGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 84109 0.72 0.708595
Target:  5'- gGGCGggAUGGGgAGggGGGCagCGGGCGg -3'
miRNA:   3'- gCCGU--UAUCCgUCuaCUCGa-GCCUGC- -5'
23857 3' -54 NC_005261.1 + 92119 0.67 0.929692
Target:  5'- -cGUGGUAGGCgaAGAauAGCUCGGGCu -3'
miRNA:   3'- gcCGUUAUCCG--UCUacUCGAGCCUGc -5'
23857 3' -54 NC_005261.1 + 96833 0.67 0.912666
Target:  5'- uCGGCGGUgucgAGGcCGGGgucgacgggGGGCUCGGGgGg -3'
miRNA:   3'- -GCCGUUA----UCC-GUCUa--------CUCGAGCCUgC- -5'
23857 3' -54 NC_005261.1 + 97548 0.68 0.886525
Target:  5'- cCGGCGGUGccGGCccguccgcccgGGGUuGGCUCGGugGc -3'
miRNA:   3'- -GCCGUUAU--CCG-----------UCUAcUCGAGCCugC- -5'
23857 3' -54 NC_005261.1 + 97591 0.71 0.718765
Target:  5'- gGGCGGagcGGGCGGAgcGGGCggagCGGGCGg -3'
miRNA:   3'- gCCGUUa--UCCGUCUa-CUCGa---GCCUGC- -5'
23857 3' -54 NC_005261.1 + 97702 0.72 0.676679
Target:  5'- gGGCGGUGgggagacGGCGGGUG-GCcCGGGCGg -3'
miRNA:   3'- gCCGUUAU-------CCGUCUACuCGaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 97744 0.73 0.625591
Target:  5'- uGGCAG-GGGCGGGgcGGGCUCGG-CGg -3'
miRNA:   3'- gCCGUUaUCCGUCUa-CUCGAGCCuGC- -5'
23857 3' -54 NC_005261.1 + 97952 0.67 0.91859
Target:  5'- gCGGCAAcgAGGgAGGUG-GCggCGGAgCGg -3'
miRNA:   3'- -GCCGUUa-UCCgUCUACuCGa-GCCU-GC- -5'
23857 3' -54 NC_005261.1 + 98359 0.67 0.929692
Target:  5'- gCGGgGGUGGGCGc--GGGCUCuGGCGg -3'
miRNA:   3'- -GCCgUUAUCCGUcuaCUCGAGcCUGC- -5'
23857 3' -54 NC_005261.1 + 98564 0.7 0.777822
Target:  5'- cCGGCGGgcGGCcGuccuccgcGGGCUCGGGCGa -3'
miRNA:   3'- -GCCGUUauCCGuCua------CUCGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 105273 0.69 0.823394
Target:  5'- uCGGCGGgcGGCAGcgccggcGAGCcCGGGCGc -3'
miRNA:   3'- -GCCGUUauCCGUCua-----CUCGaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 105866 0.66 0.93487
Target:  5'- uCGGCGAUgcgguuGGGCAGGUgcacgaucGAGCacaucucCGGGCGc -3'
miRNA:   3'- -GCCGUUA------UCCGUCUA--------CUCGa------GCCUGC- -5'
23857 3' -54 NC_005261.1 + 109860 0.76 0.473543
Target:  5'- gCGGCuccuggGGGCAGcgGGGCccgCGGGCGg -3'
miRNA:   3'- -GCCGuua---UCCGUCuaCUCGa--GCCUGC- -5'
23857 3' -54 NC_005261.1 + 110806 0.75 0.502745
Target:  5'- gGGCGAggaggcggGGGCGGAcgGGGCcgCGGACGa -3'
miRNA:   3'- gCCGUUa-------UCCGUCUa-CUCGa-GCCUGC- -5'
23857 3' -54 NC_005261.1 + 111466 0.7 0.811937
Target:  5'- cCGGCGAggccaaaaggcGGGCGGGUGAGauggcaagcgaggggCGGACGa -3'
miRNA:   3'- -GCCGUUa----------UCCGUCUACUCga-------------GCCUGC- -5'
23857 3' -54 NC_005261.1 + 114319 0.67 0.91859
Target:  5'- cCGGCAGUccggcgcaAGGUGGAcuGGCUCGaGCGg -3'
miRNA:   3'- -GCCGUUA--------UCCGUCUacUCGAGCcUGC- -5'
23857 3' -54 NC_005261.1 + 121792 0.7 0.814607
Target:  5'- cCGGCGGgcUGGGCAGGgggcgcguggcUGGGCUcugCGGGCc -3'
miRNA:   3'- -GCCGUU--AUCCGUCU-----------ACUCGA---GCCUGc -5'
23857 3' -54 NC_005261.1 + 123153 0.7 0.805647
Target:  5'- aGGCAuacgaGGGCGGGgcGGGCgcgCGGGCGu -3'
miRNA:   3'- gCCGUua---UCCGUCUa-CUCGa--GCCUGC- -5'
23857 3' -54 NC_005261.1 + 127909 0.7 0.796524
Target:  5'- gGGCc-UGGGCu--UGGGCUCGGGCc -3'
miRNA:   3'- gCCGuuAUCCGucuACUCGAGCCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.