miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23857 3' -54 NC_005261.1 + 533 0.69 0.848634
Target:  5'- gGGCGggGGGCAGGgcgGAcggcgGCUCGGcCGc -3'
miRNA:   3'- gCCGUuaUCCGUCUa--CU-----CGAGCCuGC- -5'
23857 3' -54 NC_005261.1 + 1014 0.8 0.288613
Target:  5'- gGGCGggGGGCGGGUGGGCUuuugcggagggcggCGGGCGg -3'
miRNA:   3'- gCCGUuaUCCGUCUACUCGA--------------GCCUGC- -5'
23857 3' -54 NC_005261.1 + 2532 0.72 0.708595
Target:  5'- gCGGCAGUAGGCcgccagcgccgcGGcgcUGGGCgCGGGCGu -3'
miRNA:   3'- -GCCGUUAUCCG------------UCu--ACUCGaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 2595 0.67 0.91859
Target:  5'- gCGGCGgaagccgccGUcGGCGGcgGGGCcgcCGGGCGg -3'
miRNA:   3'- -GCCGU---------UAuCCGUCuaCUCGa--GCCUGC- -5'
23857 3' -54 NC_005261.1 + 2814 0.71 0.718765
Target:  5'- gGGCc--GGGCGGccccagcccGAGCUCGGGCGg -3'
miRNA:   3'- gCCGuuaUCCGUCua-------CUCGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 9628 0.72 0.688061
Target:  5'- aGGCGGggguggGGGCuGGGUGGGCggggcccacUCGGGCGg -3'
miRNA:   3'- gCCGUUa-----UCCG-UCUACUCG---------AGCCUGC- -5'
23857 3' -54 NC_005261.1 + 12362 0.71 0.758577
Target:  5'- gCGGCAAccGGCGcgucuucgauGGUGAGCUCgaGGAUGg -3'
miRNA:   3'- -GCCGUUauCCGU----------CUACUCGAG--CCUGC- -5'
23857 3' -54 NC_005261.1 + 12771 0.73 0.646485
Target:  5'- gCGGCGGU-GGCGGG-GGGCUCGucGGCGa -3'
miRNA:   3'- -GCCGUUAuCCGUCUaCUCGAGC--CUGC- -5'
23857 3' -54 NC_005261.1 + 13091 0.69 0.840415
Target:  5'- uCGGCGGgcGGCGGGcucGGCUCGGGgGc -3'
miRNA:   3'- -GCCGUUauCCGUCUac-UCGAGCCUgC- -5'
23857 3' -54 NC_005261.1 + 13716 0.69 0.840415
Target:  5'- gGGCGGggguggGGGUggGGGUGGGCUUGGcCGc -3'
miRNA:   3'- gCCGUUa-----UCCG--UCUACUCGAGCCuGC- -5'
23857 3' -54 NC_005261.1 + 14130 0.71 0.718765
Target:  5'- gGGCGGUGGGCAGuc--GCUCgcgaGGACGc -3'
miRNA:   3'- gCCGUUAUCCGUCuacuCGAG----CCUGC- -5'
23857 3' -54 NC_005261.1 + 15959 0.68 0.886525
Target:  5'- gGGCGAguggcGGGCGGGggaGGGCcCGGGCc -3'
miRNA:   3'- gCCGUUa----UCCGUCUa--CUCGaGCCUGc -5'
23857 3' -54 NC_005261.1 + 16160 0.74 0.573583
Target:  5'- cCGGCA--GGGCAGuaggGGGCgCGGGCGu -3'
miRNA:   3'- -GCCGUuaUCCGUCua--CUCGaGCCUGC- -5'
23857 3' -54 NC_005261.1 + 17063 0.66 0.952704
Target:  5'- gCGGCcGUccuggaaGGGCgacgGGAUGGGCcCGGugGu -3'
miRNA:   3'- -GCCGuUA-------UCCG----UCUACUCGaGCCugC- -5'
23857 3' -54 NC_005261.1 + 23479 0.67 0.917425
Target:  5'- gCGGCGAgugcgcgggcccgccUGGGCAGGcgcGGGCccugggagcacgcggUCGGGCGa -3'
miRNA:   3'- -GCCGUU---------------AUCCGUCUa--CUCG---------------AGCCUGC- -5'
23857 3' -54 NC_005261.1 + 23791 0.7 0.796524
Target:  5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3'
miRNA:   3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5'
23857 3' -54 NC_005261.1 + 23848 0.7 0.796524
Target:  5'- gGGCucgccgGGGCAGGccGGCUgGGGCGg -3'
miRNA:   3'- gCCGuua---UCCGUCUacUCGAgCCUGC- -5'
23857 3' -54 NC_005261.1 + 23887 0.67 0.900079
Target:  5'- gGGCGGgccGGCuaGGGUGGGCUCgcuGGGCu -3'
miRNA:   3'- gCCGUUau-CCG--UCUACUCGAG---CCUGc -5'
23857 3' -54 NC_005261.1 + 24017 0.67 0.924266
Target:  5'- aGGgGAggGGGCGGAgcgcgGGGUUCGGGUGg -3'
miRNA:   3'- gCCgUUa-UCCGUCUa----CUCGAGCCUGC- -5'
23857 3' -54 NC_005261.1 + 24118 0.71 0.748774
Target:  5'- gGGCccgAGGCGGGgguggGGGCUgGGugGg -3'
miRNA:   3'- gCCGuuaUCCGUCUa----CUCGAgCCugC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.