miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23858 3' -46 NC_005262.1 + 39123 0.66 0.997319
Target:  5'- gCUGUgauuuugucgcucaACGACGcUGGCGAcguAGC-UGUCa -3'
miRNA:   3'- -GACA--------------UGCUGU-ACCGUUuu-UCGuACAG- -5'
23858 3' -46 NC_005262.1 + 2073 0.66 0.996329
Target:  5'- -cGUGCGcACAUGGuCGcuuccGGGGGCAUGg- -3'
miRNA:   3'- gaCAUGC-UGUACC-GU-----UUUUCGUACag -5'
23858 3' -46 NC_005262.1 + 58796 0.67 0.992791
Target:  5'- gCUGggucgACGACGUgaucGGCGccguGAAGGCAUGg- -3'
miRNA:   3'- -GACa----UGCUGUA----CCGU----UUUUCGUACag -5'
23858 3' -46 NC_005262.1 + 61792 0.67 0.990207
Target:  5'- ---aGCGcCGUGGCGugGAGCAUG-Cg -3'
miRNA:   3'- gacaUGCuGUACCGUuuUUCGUACaG- -5'
23858 3' -46 NC_005262.1 + 34620 0.68 0.985033
Target:  5'- -gGUGCGACuacaacGGCAAGAAGCucgacccggcGUCg -3'
miRNA:   3'- gaCAUGCUGua----CCGUUUUUCGua--------CAG- -5'
23858 3' -46 NC_005262.1 + 60190 0.68 0.982911
Target:  5'- gUGgGCGGCAaccGGCAAGGAGCcgGcCg -3'
miRNA:   3'- gACaUGCUGUa--CCGUUUUUCGuaCaG- -5'
23858 3' -46 NC_005262.1 + 25338 0.68 0.98057
Target:  5'- -cGUAgGAUAcGGCGAcGAGCGUGcCg -3'
miRNA:   3'- gaCAUgCUGUaCCGUUuUUCGUACaG- -5'
23858 3' -46 NC_005262.1 + 27738 0.71 0.931599
Target:  5'- -aGUGCGGCAgguUGGCAGuaccGGGCGUacgGUCg -3'
miRNA:   3'- gaCAUGCUGU---ACCGUUu---UUCGUA---CAG- -5'
23858 3' -46 NC_005262.1 + 63026 0.71 0.919201
Target:  5'- -aGUACGGCAUcGGCAAcuGGCGcaaGUCc -3'
miRNA:   3'- gaCAUGCUGUA-CCGUUuuUCGUa--CAG- -5'
23858 3' -46 NC_005262.1 + 31943 0.75 0.799313
Target:  5'- gCUGUACGGCgguGUGGCGAcGAGCAa--- -3'
miRNA:   3'- -GACAUGCUG---UACCGUUuUUCGUacag -5'
23858 3' -46 NC_005262.1 + 63628 1.12 0.006051
Target:  5'- gCUGUACGACAUGGCAAAAAGCAUGUCg -3'
miRNA:   3'- -GACAUGCUGUACCGUUUUUCGUACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.