miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23858 5' -54 NC_005262.1 + 57461 0.66 0.80339
Target:  5'- gCGGCGGCGa---Cg---AUGGAGGUCg -3'
miRNA:   3'- -GCCGCUGCgaaaGacgaUACCUCCAG- -5'
23858 5' -54 NC_005262.1 + 1488 0.66 0.783826
Target:  5'- cCGGCGcugcCGCUgcaUCUGCggagGGAGGc- -3'
miRNA:   3'- -GCCGCu---GCGAa--AGACGaua-CCUCCag -5'
23858 5' -54 NC_005262.1 + 52115 0.66 0.78283
Target:  5'- uCGGCGACGCcgUgaagcccuacCUGCUGUcguucugGGAGG-Cg -3'
miRNA:   3'- -GCCGCUGCGaaA----------GACGAUA-------CCUCCaG- -5'
23858 5' -54 NC_005262.1 + 52748 0.67 0.763626
Target:  5'- aGGCGACGCUgcggccugUUGCUGcGcGcGGUCu -3'
miRNA:   3'- gCCGCUGCGAaa------GACGAUaC-CuCCAG- -5'
23858 5' -54 NC_005262.1 + 29180 0.67 0.721687
Target:  5'- aGGCGGCcg--UCgccgaGCUgAUGGAGGUCa -3'
miRNA:   3'- gCCGCUGcgaaAGa----CGA-UACCUCCAG- -5'
23858 5' -54 NC_005262.1 + 62579 0.68 0.706631
Target:  5'- gCGGCGAgcuuugcCGCcUUCUGCUAcacgaugugguugaUGGGGG-Cg -3'
miRNA:   3'- -GCCGCU-------GCGaAAGACGAU--------------ACCUCCaG- -5'
23858 5' -54 NC_005262.1 + 17266 0.68 0.68925
Target:  5'- cCGGCGccGCGCUgggCUGCUGcgcgggcaGGGGcGUCg -3'
miRNA:   3'- -GCCGC--UGCGAaa-GACGAUa-------CCUC-CAG- -5'
23858 5' -54 NC_005262.1 + 6996 0.68 0.678312
Target:  5'- aCGGCGACGCUUcgaacagcgCggcgGCUucgGUGGAcGUCa -3'
miRNA:   3'- -GCCGCUGCGAAa--------Ga---CGA---UACCUcCAG- -5'
23858 5' -54 NC_005262.1 + 40994 0.68 0.66733
Target:  5'- gCGGCGGCGCUcgCUGCUgAUGGc---- -3'
miRNA:   3'- -GCCGCUGCGAaaGACGA-UACCuccag -5'
23858 5' -54 NC_005262.1 + 31179 0.69 0.656314
Target:  5'- aCGGCGugGUgcgCUGCUG-GGuAGGcCa -3'
miRNA:   3'- -GCCGCugCGaaaGACGAUaCC-UCCaG- -5'
23858 5' -54 NC_005262.1 + 49229 0.7 0.601103
Target:  5'- uCGGCGGCGCgcagUCcGCgcgcGAGGUCc -3'
miRNA:   3'- -GCCGCUGCGaa--AGaCGauacCUCCAG- -5'
23858 5' -54 NC_005262.1 + 35166 0.72 0.453092
Target:  5'- gGGCGACGCUggCgGCaAUG-AGGUCa -3'
miRNA:   3'- gCCGCUGCGAaaGaCGaUACcUCCAG- -5'
23858 5' -54 NC_005262.1 + 49551 0.77 0.241423
Target:  5'- cCGGCGACGCUgcgucCUGCUcGUGcGuGGUCg -3'
miRNA:   3'- -GCCGCUGCGAaa---GACGA-UAC-CuCCAG- -5'
23858 5' -54 NC_005262.1 + 63662 1.11 0.00113
Target:  5'- cCGGCGACGCUUUCUGCUAUGGAGGUCg -3'
miRNA:   3'- -GCCGCUGCGAAAGACGAUACCUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.