miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23860 3' -57.2 NC_005262.1 + 12905 0.66 0.600787
Target:  5'- cGUUCAGGUgauUGAcgagcgcGCCGUGCgauUGCGUc -3'
miRNA:   3'- aCGAGUCCG---ACUau-----CGGCACG---ACGCA- -5'
23860 3' -57.2 NC_005262.1 + 24061 0.67 0.546659
Target:  5'- aGUUgGGGUUGAUGcGCUGcgccUGCUGCGc -3'
miRNA:   3'- aCGAgUCCGACUAU-CGGC----ACGACGCa -5'
23860 3' -57.2 NC_005262.1 + 26335 0.67 0.536003
Target:  5'- aUGCUCgaGGaGCUGAU-GCCGgGCgUGCGg -3'
miRNA:   3'- -ACGAG--UC-CGACUAuCGGCaCG-ACGCa -5'
23860 3' -57.2 NC_005262.1 + 27173 0.67 0.536003
Target:  5'- gGCcgCAuGGUgUGGU-GCCGUGCUGUGUg -3'
miRNA:   3'- aCGa-GU-CCG-ACUAuCGGCACGACGCA- -5'
23860 3' -57.2 NC_005262.1 + 56143 0.67 0.52542
Target:  5'- cGCUCGcGgaGAUAGCCGUcGCcgccgGCGUc -3'
miRNA:   3'- aCGAGUcCgaCUAUCGGCA-CGa----CGCA- -5'
23860 3' -57.2 NC_005262.1 + 16628 0.68 0.494176
Target:  5'- aGCU-GGGC-GAUAucGUCGUGCUGCGc -3'
miRNA:   3'- aCGAgUCCGaCUAU--CGGCACGACGCa -5'
23860 3' -57.2 NC_005262.1 + 52743 0.68 0.473825
Target:  5'- gGCUCAGGCgacgcugcGGCCuguUGCUGCGc -3'
miRNA:   3'- aCGAGUCCGacua----UCGGc--ACGACGCa -5'
23860 3' -57.2 NC_005262.1 + 15758 0.69 0.444113
Target:  5'- cGCUugCGGGCgc--GGCCGgcUGCUGCGUg -3'
miRNA:   3'- aCGA--GUCCGacuaUCGGC--ACGACGCA- -5'
23860 3' -57.2 NC_005262.1 + 8089 0.69 0.415478
Target:  5'- cUGCUCGGGCUGGaAGaaGcGUUGCGc -3'
miRNA:   3'- -ACGAGUCCGACUaUCggCaCGACGCa -5'
23860 3' -57.2 NC_005262.1 + 34792 0.75 0.181912
Target:  5'- cUGCUCgaugAGGCUGAgcuccuucucGCCGUGCUGCu- -3'
miRNA:   3'- -ACGAG----UCCGACUau--------CGGCACGACGca -5'
23860 3' -57.2 NC_005262.1 + 62502 1.06 0.000911
Target:  5'- cUGCUCAGGCUGAUAGCCGUGCUGCGUu -3'
miRNA:   3'- -ACGAGUCCGACUAUCGGCACGACGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.