Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23861 | 5' | -60.7 | NC_005262.1 | + | 32174 | 0.76 | 0.086417 |
Target: 5'- cCAGAa--GGCGGCGGCGgCGGCAGAa -3' miRNA: 3'- -GUCUacgUCGCCGUCGCgGCCGUCUg -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 31375 | 0.67 | 0.3607 |
Target: 5'- -cGAUGaaacCGGCAGCGauGGCGGGCu -3' miRNA: 3'- guCUACguc-GCCGUCGCggCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 30453 | 0.66 | 0.422115 |
Target: 5'- -cGAU-CGGCGGCacGGUGCCGcGCAgcGACg -3' miRNA: 3'- guCUAcGUCGCCG--UCGCGGC-CGU--CUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 30137 | 0.67 | 0.386248 |
Target: 5'- ----cGCuGCuGGUcgccgaAGCGCCGGCGGAUg -3' miRNA: 3'- gucuaCGuCG-CCG------UCGCGGCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 29036 | 0.67 | 0.369084 |
Target: 5'- -cGA-GCu-CGaGCGGCGCCGGCAcGACg -3' miRNA: 3'- guCUaCGucGC-CGUCGCGGCCGU-CUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 26499 | 0.7 | 0.238821 |
Target: 5'- gAGcGUGCAGCaGCAGCGCUGGauGACc -3' miRNA: 3'- gUC-UACGUCGcCGUCGCGGCCguCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 24205 | 0.68 | 0.320801 |
Target: 5'- aGGcgGCAGCcGCGacgcuGCGCCGGCAcGCc -3' miRNA: 3'- gUCuaCGUCGcCGU-----CGCGGCCGUcUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 23674 | 0.66 | 0.444574 |
Target: 5'- uGGAUGCcgcccgAGCGGCgcgugugggucuaccGGCGCaCGGUcGACc -3' miRNA: 3'- gUCUACG------UCGCCG---------------UCGCG-GCCGuCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 22113 | 0.67 | 0.3607 |
Target: 5'- aUAGAUGCcGauGcCGGUGCCGGCGG-Cg -3' miRNA: 3'- -GUCUACGuCgcC-GUCGCGGCCGUCuG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 21682 | 0.69 | 0.291328 |
Target: 5'- ---cUG-AGCGGCGGCGCCGcgcugcuguacGCGGGCa -3' miRNA: 3'- gucuACgUCGCCGUCGCGGC-----------CGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 20741 | 0.7 | 0.238821 |
Target: 5'- ----cGCGGCGcGCGGUGCCGGcCGGGu -3' miRNA: 3'- gucuaCGUCGC-CGUCGCGGCC-GUCUg -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 20586 | 0.66 | 0.43139 |
Target: 5'- -cGA-GCAGCGcGCGGCGCgCcGCAGGg -3' miRNA: 3'- guCUaCGUCGC-CGUCGCG-GcCGUCUg -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 17563 | 0.66 | 0.401245 |
Target: 5'- gCAGccGCGGCGGCGcGCgaagccgaggagaaGCUGGCGGcGCa -3' miRNA: 3'- -GUCuaCGUCGCCGU-CG--------------CGGCCGUC-UG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 17353 | 0.69 | 0.284299 |
Target: 5'- uCGGGUcCGGCgcgGGCGGCG-CGGCGGGCc -3' miRNA: 3'- -GUCUAcGUCG---CCGUCGCgGCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 17253 | 0.75 | 0.104869 |
Target: 5'- gCGGGaGCGGCGGcCGGCGCCGcGCuGGGCu -3' miRNA: 3'- -GUCUaCGUCGCC-GUCGCGGC-CG-UCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 16573 | 0.66 | 0.412961 |
Target: 5'- gCGGAUGCcgAGCaGGCGcguGUGCUGGUcgAGGCg -3' miRNA: 3'- -GUCUACG--UCG-CCGU---CGCGGCCG--UCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 15992 | 0.68 | 0.305793 |
Target: 5'- gAGAU-CGGCGuGCAGCGC-GGCAccGACg -3' miRNA: 3'- gUCUAcGUCGC-CGUCGCGgCCGU--CUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 15087 | 0.66 | 0.419356 |
Target: 5'- cCAGAacgacgcgucuuucUGCGGC-GCGGCGuCCGGCuGGAa -3' miRNA: 3'- -GUCU--------------ACGUCGcCGUCGC-GGCCG-UCUg -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 14011 | 0.66 | 0.422115 |
Target: 5'- uGGAcccCAGCGuGCAGuCGCuUGGCGGACc -3' miRNA: 3'- gUCUac-GUCGC-CGUC-GCG-GCCGUCUG- -5' |
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23861 | 5' | -60.7 | NC_005262.1 | + | 14008 | 0.71 | 0.215667 |
Target: 5'- -cGGUGCAggggcguccggcGCGGCAGCgGCCGGagccuCGGGCg -3' miRNA: 3'- guCUACGU------------CGCCGUCG-CGGCC-----GUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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