miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 33914 0.75 0.113863
Target:  5'- -cGAUcgGUAGCGGCGGUGCCgagcucgcGGCGGGCa -3'
miRNA:   3'- guCUA--CGUCGCCGUCGCGG--------CCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 46648 0.73 0.141481
Target:  5'- -uGAUGgccgaCAGCGGCagcauGGCGCCGGCAccGACg -3'
miRNA:   3'- guCUAC-----GUCGCCG-----UCGCGGCCGU--CUG- -5'
23861 5' -60.7 NC_005262.1 + 12556 0.7 0.237015
Target:  5'- gCAGGUcGCGGCGGCGcucgucgagcugcuGCugccGCCGGCgAGGCg -3'
miRNA:   3'- -GUCUA-CGUCGCCGU--------------CG----CGGCCG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 49174 0.71 0.215667
Target:  5'- uCGGccGCAGCGGC-GCGCaCGGC-GAUg -3'
miRNA:   3'- -GUCuaCGUCGCCGuCGCG-GCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 5066 0.73 0.157485
Target:  5'- gCAGGcccGCGGCGGCGGCGCgugcgaccggcuCGGCGGuGCg -3'
miRNA:   3'- -GUCUa--CGUCGCCGUCGCG------------GCCGUC-UG- -5'
23861 5' -60.7 NC_005262.1 + 52808 0.72 0.170543
Target:  5'- aGGAUucGCAGUGGCAgGCGCuCGGCGaGCg -3'
miRNA:   3'- gUCUA--CGUCGCCGU-CGCG-GCCGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 45002 0.7 0.24431
Target:  5'- -cGcgGCAgGCGGCGGaCGCCaacacgcGGCAGAUg -3'
miRNA:   3'- guCuaCGU-CGCCGUC-GCGG-------CCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 57452 0.7 0.244926
Target:  5'- gCGGAUGCcGCGGCGGCGacgaUGGaggucgaGGGCg -3'
miRNA:   3'- -GUCUACGuCGCCGUCGCg---GCCg------UCUG- -5'
23861 5' -60.7 NC_005262.1 + 30137 0.67 0.386248
Target:  5'- ----cGCuGCuGGUcgccgaAGCGCCGGCGGAUg -3'
miRNA:   3'- gucuaCGuCG-CCG------UCGCGGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 53430 0.67 0.369084
Target:  5'- aCGGAcgUGCuguuccuccagaAGC-GCGGCGCCGGCgucgaGGACa -3'
miRNA:   3'- -GUCU--ACG------------UCGcCGUCGCGGCCG-----UCUG- -5'
23861 5' -60.7 NC_005262.1 + 51190 0.67 0.3607
Target:  5'- -cGAcGCGGCGGCccgcuGGaGCCGcGCGGGCg -3'
miRNA:   3'- guCUaCGUCGCCG-----UCgCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 36269 0.68 0.344334
Target:  5'- -cGAUGCAGauGCgugGGCGCgCGGC-GACg -3'
miRNA:   3'- guCUACGUCgcCG---UCGCG-GCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 10019 0.68 0.328509
Target:  5'- gAGAUcaaGCAGaaGGUGGCaGCCGGaCAGACg -3'
miRNA:   3'- gUCUA---CGUCg-CCGUCG-CGGCC-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 24205 0.68 0.320801
Target:  5'- aGGcgGCAGCcGCGacgcuGCGCCGGCAcGCc -3'
miRNA:   3'- gUCuaCGUCGcCGU-----CGCGGCCGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 49853 0.68 0.316241
Target:  5'- -cGGUGcCGGCGGCGGUaccggaagcagcucaGCCGGcCGGAa -3'
miRNA:   3'- guCUAC-GUCGCCGUCG---------------CGGCC-GUCUg -5'
23861 5' -60.7 NC_005262.1 + 61453 0.66 0.450293
Target:  5'- aAGAagGCGGCGGaCGGCGaaGcGCuAGACg -3'
miRNA:   3'- gUCUa-CGUCGCC-GUCGCggC-CG-UCUG- -5'
23861 5' -60.7 NC_005262.1 + 15992 0.68 0.305793
Target:  5'- gAGAU-CGGCGuGCAGCGC-GGCAccGACg -3'
miRNA:   3'- gUCUAcGUCGC-CGUCGCGgCCGU--CUG- -5'
23861 5' -60.7 NC_005262.1 + 4575 0.68 0.305793
Target:  5'- ----cGcCAGCGGCGGCGCUGcuCGGGCg -3'
miRNA:   3'- gucuaC-GUCGCCGUCGCGGCc-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 21682 0.69 0.291328
Target:  5'- ---cUG-AGCGGCGGCGCCGcgcugcuguacGCGGGCa -3'
miRNA:   3'- gucuACgUCGCCGUCGCGGC-----------CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 5017 0.7 0.244926
Target:  5'- uCGGcUGCcuccAGCGGCAGUugcucGCCGGCcGGCg -3'
miRNA:   3'- -GUCuACG----UCGCCGUCG-----CGGCCGuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.