miRNA display CGI


Results 61 - 76 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23861 5' -60.7 NC_005262.1 + 48975 0.66 0.440784
Target:  5'- gCAGAUGCA--GGCGGCGCUcaagaaagacuGGUGGAa -3'
miRNA:   3'- -GUCUACGUcgCCGUCGCGG-----------CCGUCUg -5'
23861 5' -60.7 NC_005262.1 + 20586 0.66 0.43139
Target:  5'- -cGA-GCAGCGcGCGGCGCgCcGCAGGg -3'
miRNA:   3'- guCUaCGUCGC-CGUCGCG-GcCGUCUg -5'
23861 5' -60.7 NC_005262.1 + 46691 0.66 0.43139
Target:  5'- -cGAUGCAGU--CAGCGCCGcGCGcGCa -3'
miRNA:   3'- guCUACGUCGccGUCGCGGC-CGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 14011 0.66 0.422115
Target:  5'- uGGAcccCAGCGuGCAGuCGCuUGGCGGACc -3'
miRNA:   3'- gUCUac-GUCGC-CGUC-GCG-GCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 16573 0.66 0.412961
Target:  5'- gCGGAUGCcgAGCaGGCGcguGUGCUGGUcgAGGCg -3'
miRNA:   3'- -GUCUACG--UCG-CCGU---CGCGGCCG--UCUG- -5'
23861 5' -60.7 NC_005262.1 + 30137 0.67 0.386248
Target:  5'- ----cGCuGCuGGUcgccgaAGCGCCGGCGGAUg -3'
miRNA:   3'- gucuaCGuCG-CCG------UCGCGGCCGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 53430 0.67 0.369084
Target:  5'- aCGGAcgUGCuguuccuccagaAGC-GCGGCGCCGGCgucgaGGACa -3'
miRNA:   3'- -GUCU--ACG------------UCGcCGUCGCGGCCG-----UCUG- -5'
23861 5' -60.7 NC_005262.1 + 17563 0.66 0.401245
Target:  5'- gCAGccGCGGCGGCGcGCgaagccgaggagaaGCUGGCGGcGCa -3'
miRNA:   3'- -GUCuaCGUCGCCGU-CG--------------CGGCCGUC-UG- -5'
23861 5' -60.7 NC_005262.1 + 51190 0.67 0.3607
Target:  5'- -cGAcGCGGCGGCccgcuGGaGCCGcGCGGGCg -3'
miRNA:   3'- guCUaCGUCGCCG-----UCgCGGC-CGUCUG- -5'
23861 5' -60.7 NC_005262.1 + 36269 0.68 0.344334
Target:  5'- -cGAUGCAGauGCgugGGCGCgCGGC-GACg -3'
miRNA:   3'- guCUACGUCgcCG---UCGCG-GCCGuCUG- -5'
23861 5' -60.7 NC_005262.1 + 10019 0.68 0.328509
Target:  5'- gAGAUcaaGCAGaaGGUGGCaGCCGGaCAGACg -3'
miRNA:   3'- gUCUA---CGUCg-CCGUCG-CGGCC-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 24205 0.68 0.320801
Target:  5'- aGGcgGCAGCcGCGacgcuGCGCCGGCAcGCc -3'
miRNA:   3'- gUCuaCGUCGcCGU-----CGCGGCCGUcUG- -5'
23861 5' -60.7 NC_005262.1 + 49853 0.68 0.316241
Target:  5'- -cGGUGcCGGCGGCGGUaccggaagcagcucaGCCGGcCGGAa -3'
miRNA:   3'- guCUAC-GUCGCCGUCG---------------CGGCC-GUCUg -5'
23861 5' -60.7 NC_005262.1 + 15992 0.68 0.305793
Target:  5'- gAGAU-CGGCGuGCAGCGC-GGCAccGACg -3'
miRNA:   3'- gUCUAcGUCGC-CGUCGCGgCCGU--CUG- -5'
23861 5' -60.7 NC_005262.1 + 4575 0.68 0.305793
Target:  5'- ----cGcCAGCGGCGGCGCUGcuCGGGCg -3'
miRNA:   3'- gucuaC-GUCGCCGUCGCGGCc-GUCUG- -5'
23861 5' -60.7 NC_005262.1 + 32174 0.76 0.086417
Target:  5'- cCAGAa--GGCGGCGGCGgCGGCAGAa -3'
miRNA:   3'- -GUCUacgUCGCCGUCGCgGCCGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.