Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23862 | 3' | -59.5 | NC_005262.1 | + | 62811 | 0.66 | 0.509938 |
Target: 5'- cCGCCCCGCccgcgcaggUCGccacucGGCAgGGGCugacgGAUGa -3' miRNA: 3'- -GCGGGGCG---------AGCuu----CCGUgCCCG-----UUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 61901 | 1.09 | 0.000481 |
Target: 5'- cCGCCCCGCUCGAAGGCACGGGCAAUGg -3' miRNA: 3'- -GCGGGGCGAGCUUCCGUGCCCGUUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 61146 | 0.72 | 0.23461 |
Target: 5'- cCGCCCgGCgccgCGcAGGCAUGGGCc--- -3' miRNA: 3'- -GCGGGgCGa---GCuUCCGUGCCCGuuac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 60134 | 0.77 | 0.098021 |
Target: 5'- aGCgUCGCggCGAAGGCAUGGGCGAa- -3' miRNA: 3'- gCGgGGCGa-GCUUCCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 59968 | 0.67 | 0.480077 |
Target: 5'- uCG-CCCGCUCGAucAGGCGCGcauGCAc-- -3' miRNA: 3'- -GCgGGGCGAGCU--UCCGUGCc--CGUuac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 57744 | 0.69 | 0.337805 |
Target: 5'- uCGUCaaggCGCUCGAGGGCauuGCGcGCAAUGg -3' miRNA: 3'- -GCGGg---GCGAGCUUCCG---UGCcCGUUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 56929 | 0.71 | 0.271667 |
Target: 5'- gGCCgCGCUCGAgaAGcgcacgccgauccGCGCGGGCGAg- -3' miRNA: 3'- gCGGgGCGAGCU--UC-------------CGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 55513 | 0.67 | 0.470313 |
Target: 5'- cCGCCUCGCgagCGA---CGCGGGCAGc- -3' miRNA: 3'- -GCGGGGCGa--GCUuccGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 55016 | 0.69 | 0.345748 |
Target: 5'- -aCCUCGCgcacgCGGucGGCGCGGGCAAg- -3' miRNA: 3'- gcGGGGCGa----GCUu-CCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 54622 | 0.67 | 0.489939 |
Target: 5'- gCGCCgaCCGCcaugcgUGAAGGCGCcGGGUGAUc -3' miRNA: 3'- -GCGG--GGCGa-----GCUUCCGUG-CCCGUUAc -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 54023 | 0.68 | 0.420358 |
Target: 5'- gGCaaCCUGCUCGccuacagcaccaucGAGcGCACGGGCGAc- -3' miRNA: 3'- gCG--GGGCGAGC--------------UUC-CGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 53018 | 0.66 | 0.499894 |
Target: 5'- aGCaguaCCGCgCGcccGGCGCGGGCGGa- -3' miRNA: 3'- gCGg---GGCGaGCuu-CCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 51197 | 0.76 | 0.1252 |
Target: 5'- gCGgCCCGCUgGAGccGCGCGGGCGAUGc -3' miRNA: 3'- -GCgGGGCGAgCUUc-CGUGCCCGUUAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 49410 | 0.7 | 0.292956 |
Target: 5'- uGgUCUGUUCGgcGGCAUGGGCGAc- -3' miRNA: 3'- gCgGGGCGAGCuuCCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 48463 | 0.71 | 0.271667 |
Target: 5'- uGCCgCGCggaucgCGAgccgcguGGGCACGGGCGGc- -3' miRNA: 3'- gCGGgGCGa-----GCU-------UCCGUGCCCGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 46980 | 0.67 | 0.441649 |
Target: 5'- uCGgCCUGUgggCGAAGGCAUGGcGCGc-- -3' miRNA: 3'- -GCgGGGCGa--GCUUCCGUGCC-CGUuac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 46810 | 0.67 | 0.470313 |
Target: 5'- gCGCUCgGC-CGgcGGCAgcaGGGCAAUa -3' miRNA: 3'- -GCGGGgCGaGCuuCCGUg--CCCGUUAc -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 45970 | 0.71 | 0.252894 |
Target: 5'- -uUCCCGCUCGAGGGUugGGaCGAc- -3' miRNA: 3'- gcGGGGCGAGCUUCCGugCCcGUUac -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 45448 | 0.67 | 0.451095 |
Target: 5'- gGCUCgGaaccaUCGccGGCGCGGGCAucAUGg -3' miRNA: 3'- gCGGGgCg----AGCuuCCGUGCCCGU--UAC- -5' |
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23862 | 3' | -59.5 | NC_005262.1 | + | 43978 | 0.75 | 0.147043 |
Target: 5'- gGCUCUGCgcgUGAucGCGCGGGCGAUGg -3' miRNA: 3'- gCGGGGCGa--GCUucCGUGCCCGUUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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