miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23862 3' -59.5 NC_005262.1 + 14018 0.66 0.550891
Target:  5'- gCGUCCgGCgcggcagCGGccggagccucGGGCGCGGGCGc-- -3'
miRNA:   3'- -GCGGGgCGa------GCU----------UCCGUGCCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 29032 0.69 0.345748
Target:  5'- cCGCCgaGCUCGAGcGGCGCcGGCAc-- -3'
miRNA:   3'- -GCGGggCGAGCUU-CCGUGcCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 895 0.7 0.300096
Target:  5'- gCGCgCCaGCUCGucGGCgcgcugGCGGGUGAUGg -3'
miRNA:   3'- -GCGgGG-CGAGCuuCCG------UGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 61901 1.09 0.000481
Target:  5'- cCGCCCCGCUCGAAGGCACGGGCAAUGg -3'
miRNA:   3'- -GCGGGGCGAGCUUCCGUGCCCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 11747 0.66 0.520065
Target:  5'- -aCCCCGgaCUCGAuguAGGCGCcGGCGAUc -3'
miRNA:   3'- gcGGGGC--GAGCU---UCCGUGcCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 62811 0.66 0.509938
Target:  5'- cCGCCCCGCccgcgcaggUCGccacucGGCAgGGGCugacgGAUGa -3'
miRNA:   3'- -GCGGGGCG---------AGCuu----CCGUgCCCG-----UUAC- -5'
23862 3' -59.5 NC_005262.1 + 53018 0.66 0.499894
Target:  5'- aGCaguaCCGCgCGcccGGCGCGGGCGGa- -3'
miRNA:   3'- gCGg---GGCGaGCuu-CCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 54622 0.67 0.489939
Target:  5'- gCGCCgaCCGCcaugcgUGAAGGCGCcGGGUGAUc -3'
miRNA:   3'- -GCGG--GGCGa-----GCUUCCGUG-CCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 36267 0.67 0.470313
Target:  5'- uCGCCCuCG-UCGguGcGCGCGGGCAc-- -3'
miRNA:   3'- -GCGGG-GCgAGCuuC-CGUGCCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 17269 0.68 0.396172
Target:  5'- gCGCCgCGCUgGGcugcuGCGCGGGCAggGg -3'
miRNA:   3'- -GCGGgGCGAgCUuc---CGUGCCCGUuaC- -5'
23862 3' -59.5 NC_005262.1 + 8876 0.67 0.445414
Target:  5'- aCGCCCggcaGCgucaggugcgagccgUCGAAcuGGCGCGGcGCGAUGu -3'
miRNA:   3'- -GCGGGg---CG---------------AGCUU--CCGUGCC-CGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 46810 0.67 0.470313
Target:  5'- gCGCUCgGC-CGgcGGCAgcaGGGCAAUa -3'
miRNA:   3'- -GCGGGgCGaGCuuCCGUg--CCCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 13514 0.66 0.550891
Target:  5'- gGCCgUcacggGCUCGGccGGCGCGGGCGc-- -3'
miRNA:   3'- gCGGgG-----CGAGCUu-CCGUGCCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 8 0.68 0.414002
Target:  5'- aGCCCCGaCUCGcGAGaGC-CGgGGCAAUc -3'
miRNA:   3'- gCGGGGC-GAGC-UUC-CGuGC-CCGUUAc -5'
23862 3' -59.5 NC_005262.1 + 41639 0.66 0.540548
Target:  5'- uCGCCuCCaGCUCGgcGauGCGGGCAGc- -3'
miRNA:   3'- -GCGG-GG-CGAGCuuCcgUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 55513 0.67 0.470313
Target:  5'- cCGCCUCGCgagCGA---CGCGGGCAGc- -3'
miRNA:   3'- -GCGGGGCGa--GCUuccGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 5574 0.68 0.405025
Target:  5'- uGCCCaaGUUCGu-GGUACGGGCGGc- -3'
miRNA:   3'- gCGGGg-CGAGCuuCCGUGCCCGUUac -5'
23862 3' -59.5 NC_005262.1 + 1757 0.7 0.314777
Target:  5'- uGCgCCGCaUCGAGGaggaggaucGCGCGcGGCGAUGa -3'
miRNA:   3'- gCGgGGCG-AGCUUC---------CGUGC-CCGUUAC- -5'
23862 3' -59.5 NC_005262.1 + 13442 0.66 0.53027
Target:  5'- uGCgCCGCUCGc-GGUcgucGCGGGCGc-- -3'
miRNA:   3'- gCGgGGCGAGCuuCCG----UGCCCGUuac -5'
23862 3' -59.5 NC_005262.1 + 5265 0.66 0.509938
Target:  5'- aCGCCUCGUgcagcaGCACGGGCAGg- -3'
miRNA:   3'- -GCGGGGCGagcuucCGUGCCCGUUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.