miRNA display CGI


Results 41 - 60 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23863 5' -57.8 NC_005262.1 + 26984 0.67 0.475716
Target:  5'- aACCGC-GCCAGuCACGGCcguUGCagcaGCAUc -3'
miRNA:   3'- -UGGUGaCGGUU-GUGCCGu--ACGg---CGUA- -5'
23863 5' -57.8 NC_005262.1 + 57729 0.67 0.474709
Target:  5'- gGCCGCgGCCuGACgcaaccccgugguGCGGUaucGUGCCGCAc -3'
miRNA:   3'- -UGGUGaCGG-UUG-------------UGCCG---UACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 6488 0.67 0.474709
Target:  5'- uGCCGauCUGCuCGAUGCGGCGcucguucUGCUGCAc -3'
miRNA:   3'- -UGGU--GACG-GUUGUGCCGU-------ACGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 52226 0.67 0.465686
Target:  5'- gGCCGCcGCCGGCAUaGCA-GCgCGCGUg -3'
miRNA:   3'- -UGGUGaCGGUUGUGcCGUaCG-GCGUA- -5'
23863 5' -57.8 NC_005262.1 + 23409 0.67 0.465686
Target:  5'- uCCGC-GCgAACGCGGCAgacagGCCGUc- -3'
miRNA:   3'- uGGUGaCGgUUGUGCCGUa----CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 50052 0.68 0.426713
Target:  5'- cCCGCgaggcugaaUGCCuGGCACGGCGUGCCa--- -3'
miRNA:   3'- uGGUG---------ACGG-UUGUGCCGUACGGcgua -5'
23863 5' -57.8 NC_005262.1 + 10507 0.68 0.416339
Target:  5'- uGCCcUUGCUggugacgAACACGaGCAUGCCGCc- -3'
miRNA:   3'- -UGGuGACGG-------UUGUGC-CGUACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 53331 0.69 0.398789
Target:  5'- cGCCGCUGUCGuCGCGGCuu-CCGCc- -3'
miRNA:   3'- -UGGUGACGGUuGUGCCGuacGGCGua -5'
23863 5' -57.8 NC_005262.1 + 27382 0.67 0.491984
Target:  5'- uGCCAUccagcgaUGCCGGCACagguugaaugucggGGUucaGUGCCGCAUu -3'
miRNA:   3'- -UGGUG-------ACGGUUGUG--------------CCG---UACGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 3626 0.67 0.495063
Target:  5'- cCCACUgGCCGAgcgccuuCACGGCG-GCCGgGUa -3'
miRNA:   3'- uGGUGA-CGGUU-------GUGCCGUaCGGCgUA- -5'
23863 5' -57.8 NC_005262.1 + 51468 0.67 0.496091
Target:  5'- uGCCGCcGCgCGcUGCGGCAcgaGCCGCAUg -3'
miRNA:   3'- -UGGUGaCG-GUuGUGCCGUa--CGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 22124 0.66 0.579872
Target:  5'- uGCCGgUGCCGGCggcgaugACGGC--GCCGCc- -3'
miRNA:   3'- -UGGUgACGGUUG-------UGCCGuaCGGCGua -5'
23863 5' -57.8 NC_005262.1 + 42440 0.66 0.570123
Target:  5'- cGCuCGCUGC--GCGCGGCcuugGCCGCc- -3'
miRNA:   3'- -UG-GUGACGguUGUGCCGua--CGGCGua -5'
23863 5' -57.8 NC_005262.1 + 10085 0.66 0.570123
Target:  5'- cGCCACgGCCuucGACGCGGCcgGguuCUGCGc -3'
miRNA:   3'- -UGGUGaCGG---UUGUGCCGuaC---GGCGUa -5'
23863 5' -57.8 NC_005262.1 + 46237 0.66 0.570123
Target:  5'- uUCGCgcGCCGcCGCGGC-UGCCGCc- -3'
miRNA:   3'- uGGUGa-CGGUuGUGCCGuACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 17328 0.66 0.563646
Target:  5'- gGCUGCgucgugGCCGGCGCGGCAUucggguccggcgcggGCgGCGc -3'
miRNA:   3'- -UGGUGa-----CGGUUGUGCCGUA---------------CGgCGUa -5'
23863 5' -57.8 NC_005262.1 + 63624 0.66 0.536889
Target:  5'- cGCUGCUGUaCGACAUGGCAaaaagcaUGUCGCu- -3'
miRNA:   3'- -UGGUGACG-GUUGUGCCGU-------ACGGCGua -5'
23863 5' -57.8 NC_005262.1 + 38951 0.67 0.516852
Target:  5'- -gCACUGgcgcagggugaUCGGCACGGCGccgGCCGCGa -3'
miRNA:   3'- ugGUGAC-----------GGUUGUGCCGUa--CGGCGUa -5'
23863 5' -57.8 NC_005262.1 + 46690 0.67 0.506426
Target:  5'- cGCCGCgcgGUgGACcuccucGCGGCccGCCGCGUc -3'
miRNA:   3'- -UGGUGa--CGgUUG------UGCCGuaCGGCGUA- -5'
23863 5' -57.8 NC_005262.1 + 44688 0.67 0.506426
Target:  5'- gACCGCgacaaGCCguugGugACGGCGUGgCUGCAUc -3'
miRNA:   3'- -UGGUGa----CGG----UugUGCCGUAC-GGCGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.