Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23864 | 5' | -53.6 | NC_005262.1 | + | 5555 | 0.68 | 0.690267 |
Target: 5'- cGAUGCGCgGAUCGu--CACcACGCAc -3' miRNA: 3'- aCUACGCGaCUGGCuacGUGuUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 10694 | 0.69 | 0.668179 |
Target: 5'- cUGcAUGCGCaGAUCGAggccGCGCGcACGCGg -3' miRNA: 3'- -AC-UACGCGaCUGGCUa---CGUGU-UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 50423 | 0.69 | 0.657077 |
Target: 5'- gGA-GCGCgagGGCCGcGUGCACGucgucgugccGCGCGa -3' miRNA: 3'- aCUaCGCGa--CUGGC-UACGUGU----------UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 24592 | 0.69 | 0.650404 |
Target: 5'- cGGUGCGCUGAcaaggugagcccguaCCGGaggaaUGCGCAAUGa- -3' miRNA: 3'- aCUACGCGACU---------------GGCU-----ACGUGUUGCgu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 15883 | 0.69 | 0.612539 |
Target: 5'- cGAUgGCGCUGAuCCGccgcGUGCGCGcgACGUg -3' miRNA: 3'- aCUA-CGCGACU-GGC----UACGUGU--UGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 54810 | 0.69 | 0.609202 |
Target: 5'- aGAUGCGCgcgGcguuuaGCCGAUGgauuuggaccgacaCGCAGCGCGc -3' miRNA: 3'- aCUACGCGa--C------UGGCUAC--------------GUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 22674 | 0.7 | 0.590335 |
Target: 5'- aGG-GCGCgGACCaGUGCGCAgACGCGc -3' miRNA: 3'- aCUaCGCGaCUGGcUACGUGU-UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 12760 | 0.66 | 0.805128 |
Target: 5'- aUGAUGUGCccgucguucGACaCGAU-CACGGCGCGg -3' miRNA: 3'- -ACUACGCGa--------CUG-GCUAcGUGUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 60620 | 0.66 | 0.805128 |
Target: 5'- aGAUGCGCgcGAUUGGcgaccUGCGCAuGCGCc -3' miRNA: 3'- aCUACGCGa-CUGGCU-----ACGUGU-UGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 58148 | 0.66 | 0.795385 |
Target: 5'- aUGGUGCGC-GGCauccucaaggUGAUGCGCAACucggGCGa -3' miRNA: 3'- -ACUACGCGaCUG----------GCUACGUGUUG----CGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 43669 | 0.66 | 0.795385 |
Target: 5'- cUGGUGCGUcGGCaGggGCAUGACGUg -3' miRNA: 3'- -ACUACGCGaCUGgCuaCGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 45837 | 0.66 | 0.785467 |
Target: 5'- ---gGCGCUGcguCCGAUGCgaugACGAuCGCGa -3' miRNA: 3'- acuaCGCGACu--GGCUACG----UGUU-GCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 54180 | 0.66 | 0.808974 |
Target: 5'- uUGAUGUGCcacgGaaagcgcaugaaagcGCCGuUGCACAcgGCGCAg -3' miRNA: 3'- -ACUACGCGa---C---------------UGGCuACGUGU--UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 2910 | 0.66 | 0.814685 |
Target: 5'- cGGUGCGCacGGCCGAcuucaucGCGCuuucgccGCGCAu -3' miRNA: 3'- aCUACGCGa-CUGGCUa------CGUGu------UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 48190 | 0.66 | 0.814685 |
Target: 5'- cGAUGCGCUccuGCCGcacGCGCuccucGCGCGc -3' miRNA: 3'- aCUACGCGAc--UGGCua-CGUGu----UGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 47073 | 0.66 | 0.824046 |
Target: 5'- ---cGUGCUGcCCGGUGCGCAcagGgGUAu -3' miRNA: 3'- acuaCGCGACuGGCUACGUGU---UgCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 45655 | 0.66 | 0.824046 |
Target: 5'- ---cGCGCUcccGGuuGAgGCGCAGCGCu -3' miRNA: 3'- acuaCGCGA---CUggCUaCGUGUUGCGu -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 1695 | 0.66 | 0.833201 |
Target: 5'- cGAcGCGgUuGCCGcgGCGgCGACGCAu -3' miRNA: 3'- aCUaCGCgAcUGGCuaCGU-GUUGCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 46803 | 0.66 | 0.833201 |
Target: 5'- cGAgcgcGCGCUcGGCCGGcgGCAgCAGgGCAa -3' miRNA: 3'- aCUa---CGCGA-CUGGCUa-CGU-GUUgCGU- -5' |
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23864 | 5' | -53.6 | NC_005262.1 | + | 61650 | 1.09 | 0.001542 |
Target: 5'- cUGAUGCGCUGACCGAUGCACAACGCAg -3' miRNA: 3'- -ACUACGCGACUGGCUACGUGUUGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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