Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23865 | 3' | -54 | NC_005262.1 | + | 28732 | 0.67 | 0.793583 |
Target: 5'- gGCCGCGCGcccggacgccGUGAUGACCGUg------ -3' miRNA: 3'- -CGGUGCGC----------UACUGCUGGCGagauagc -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 9968 | 0.67 | 0.793583 |
Target: 5'- cGCCGCGcCGGUGGucagcuCGAugcCCGUgccgCUGUCGa -3' miRNA: 3'- -CGGUGC-GCUACU------GCU---GGCGa---GAUAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 12479 | 0.67 | 0.793583 |
Target: 5'- uGCCGCGCGcgGAUGcGCCcaUCUgGUCGa -3' miRNA: 3'- -CGGUGCGCuaCUGC-UGGcgAGA-UAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 30889 | 0.67 | 0.793583 |
Target: 5'- gGCCGgaUGGUGACG-CCGCUCgcgcUCGa -3' miRNA: 3'- -CGGUgcGCUACUGCuGGCGAGau--AGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 14418 | 0.67 | 0.783884 |
Target: 5'- cGCC-CGCGGUGAUGAaCGCgcgcGUCGc -3' miRNA: 3'- -CGGuGCGCUACUGCUgGCGaga-UAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 44419 | 0.67 | 0.783884 |
Target: 5'- cGCCGCacaCGAUGGCGACCuCg-UGUCGc -3' miRNA: 3'- -CGGUGc--GCUACUGCUGGcGagAUAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 32514 | 0.67 | 0.783884 |
Target: 5'- cGCCGCGaucuuggcCGcgGACGACUGCggCUgccgAUCGa -3' miRNA: 3'- -CGGUGC--------GCuaCUGCUGGCGa-GA----UAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 34136 | 0.67 | 0.783884 |
Target: 5'- gGCUGCGCGGgcgcgGGCGgcauGCCGCUCg---- -3' miRNA: 3'- -CGGUGCGCUa----CUGC----UGGCGAGauagc -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 12949 | 0.67 | 0.774031 |
Target: 5'- gGCgUGCGCGAcGGCaucgccGACCGCUCggcGUCGa -3' miRNA: 3'- -CG-GUGCGCUaCUG------CUGGCGAGa--UAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 6856 | 0.68 | 0.753908 |
Target: 5'- cCCGCGCGGaucGGCGugCGCUUc-UCGa -3' miRNA: 3'- cGGUGCGCUa--CUGCugGCGAGauAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 14207 | 0.68 | 0.753908 |
Target: 5'- uCCACGCGGcacUGACGGCgggCGCgaUGUCGa -3' miRNA: 3'- cGGUGCGCU---ACUGCUG---GCGagAUAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 41222 | 0.68 | 0.753908 |
Target: 5'- cGCCGCGC-AUG-CGGCCGCUaaggcCGg -3' miRNA: 3'- -CGGUGCGcUACuGCUGGCGAgaua-GC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 42032 | 0.68 | 0.753908 |
Target: 5'- uGCUugGCGAcguUGACGcguGCCGCUgCgcgAUCu -3' miRNA: 3'- -CGGugCGCU---ACUGC---UGGCGA-Ga--UAGc -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 58242 | 0.68 | 0.743659 |
Target: 5'- --uGCGUGGUGACGAuCCGCgc-AUCGa -3' miRNA: 3'- cggUGCGCUACUGCU-GGCGagaUAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 12522 | 0.68 | 0.743659 |
Target: 5'- uGCCGCGCGAc-GCGAUCGcCUCcaUGUUGc -3' miRNA: 3'- -CGGUGCGCUacUGCUGGC-GAG--AUAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 52418 | 0.68 | 0.7333 |
Target: 5'- aGCCGCGCGcgaacguCGugCGCUUcAUCGu -3' miRNA: 3'- -CGGUGCGCuacu---GCugGCGAGaUAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 18788 | 0.68 | 0.7333 |
Target: 5'- uGCCGCGUGuUGGCGuccGCCGC-CUGcCGc -3' miRNA: 3'- -CGGUGCGCuACUGC---UGGCGaGAUaGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 50278 | 0.68 | 0.722843 |
Target: 5'- cGCC-CGCGccggccgagcccGUGACGGCCGCgcggAUUGa -3' miRNA: 3'- -CGGuGCGC------------UACUGCUGGCGaga-UAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 37878 | 0.68 | 0.721792 |
Target: 5'- cGUCGCGCG-UGGCGACguaccaugcgcgcUGCUCggcAUCGa -3' miRNA: 3'- -CGGUGCGCuACUGCUG-------------GCGAGa--UAGC- -5' |
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23865 | 3' | -54 | NC_005262.1 | + | 42976 | 0.69 | 0.698475 |
Target: 5'- cGCCcCGCGAUGuucccugucgauucGCGGCUGCUCg---- -3' miRNA: 3'- -CGGuGCGCUAC--------------UGCUGGCGAGauagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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