miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23866 3' -54.7 NC_005262.1 + 2955 0.66 0.78549
Target:  5'- cGGCCaUCGCCAcGCC-GAUCGcguAGGCc -3'
miRNA:   3'- cUUGG-AGUGGU-CGGaCUAGCu--UCCGc -5'
23866 3' -54.7 NC_005262.1 + 46641 0.71 0.456306
Target:  5'- cGGCCUUGCCGGCCUucUCGAuuGCGa -3'
miRNA:   3'- cUUGGAGUGGUCGGAcuAGCUucCGC- -5'
23866 3' -54.7 NC_005262.1 + 40450 0.68 0.636856
Target:  5'- -cGCUUCacGCCGGCCgUGGUCGAGcGCGu -3'
miRNA:   3'- cuUGGAG--UGGUCGG-ACUAGCUUcCGC- -5'
23866 3' -54.7 NC_005262.1 + 25062 0.68 0.658827
Target:  5'- gGAACCagUCGCCAGCgCUGAgCGucGGGUa -3'
miRNA:   3'- -CUUGG--AGUGGUCG-GACUaGCu-UCCGc -5'
23866 3' -54.7 NC_005262.1 + 3817 0.67 0.713133
Target:  5'- aGGAUCgggugCAUgCGcGCCUGAUCGAgcGGGCGa -3'
miRNA:   3'- -CUUGGa----GUG-GU-CGGACUAGCU--UCCGC- -5'
23866 3' -54.7 NC_005262.1 + 30228 0.67 0.7238
Target:  5'- uGAUCUCGCCGGCCUcGAgcUCGucGaGCa -3'
miRNA:   3'- cUUGGAGUGGUCGGA-CU--AGCuuC-CGc -5'
23866 3' -54.7 NC_005262.1 + 60898 1.09 0.001289
Target:  5'- uGAACCUCACCAGCCUGAUCGAAGGCGa -3'
miRNA:   3'- -CUUGGAGUGGUCGGACUAGCUUCCGC- -5'
23866 3' -54.7 NC_005262.1 + 51527 0.71 0.456306
Target:  5'- ---gCUCGCCGGCCgcGAUCGAcAGGUGc -3'
miRNA:   3'- cuugGAGUGGUCGGa-CUAGCU-UCCGC- -5'
23866 3' -54.7 NC_005262.1 + 60182 0.68 0.658827
Target:  5'- uGGACCUCGuguaCAGCCUGcUCGucaugauccGGGCGc -3'
miRNA:   3'- -CUUGGAGUg---GUCGGACuAGCu--------UCCGC- -5'
23866 3' -54.7 NC_005262.1 + 20231 0.67 0.731214
Target:  5'- cGACCUC-CCAcGUCUGcgCGAggaauccggacggcAGGCGg -3'
miRNA:   3'- cUUGGAGuGGU-CGGACuaGCU--------------UCCGC- -5'
23866 3' -54.7 NC_005262.1 + 38054 0.66 0.775541
Target:  5'- uGAGCggCUUGCCGGCCUGcgCGAucGCc -3'
miRNA:   3'- -CUUG--GAGUGGUCGGACuaGCUucCGc -5'
23866 3' -54.7 NC_005262.1 + 63460 0.67 0.734376
Target:  5'- gGAGCCggucacugUCGCCAGCUUacUCGAauGGGCu -3'
miRNA:   3'- -CUUGG--------AGUGGUCGGAcuAGCU--UCCGc -5'
23866 3' -54.7 NC_005262.1 + 40322 0.69 0.571142
Target:  5'- cGAACCUCGcCCAGCCau-UCGuccAGGCc -3'
miRNA:   3'- -CUUGGAGU-GGUCGGacuAGCu--UCCGc -5'
23866 3' -54.7 NC_005262.1 + 4892 0.72 0.436734
Target:  5'- cGGGCC--GCCGGCCUGAUCGcgcAGcGCGg -3'
miRNA:   3'- -CUUGGagUGGUCGGACUAGCu--UC-CGC- -5'
23866 3' -54.7 NC_005262.1 + 29857 0.67 0.702386
Target:  5'- aGAUUUgGCCGGCCUGAccgaCGAGGaGCGc -3'
miRNA:   3'- cUUGGAgUGGUCGGACUa---GCUUC-CGC- -5'
23866 3' -54.7 NC_005262.1 + 61404 0.68 0.680699
Target:  5'- cGACCUCGCgC-GCgaGG-CGAAGGCGg -3'
miRNA:   3'- cUUGGAGUG-GuCGgaCUaGCUUCCGC- -5'
23866 3' -54.7 NC_005262.1 + 44507 0.68 0.669781
Target:  5'- -cGCCaUCuggGCCAGCCUGAUCGccGcGCu -3'
miRNA:   3'- cuUGG-AG---UGGUCGGACUAGCuuC-CGc -5'
23866 3' -54.7 NC_005262.1 + 56908 0.68 0.658827
Target:  5'- -cACgCUCGCCGGCgaGAUC-AAGGCc -3'
miRNA:   3'- cuUG-GAGUGGUCGgaCUAGcUUCCGc -5'
23866 3' -54.7 NC_005262.1 + 45705 0.71 0.496802
Target:  5'- aGGGCCggcaGCCGGCCgUGAUCGAGcaguucGGCa -3'
miRNA:   3'- -CUUGGag--UGGUCGG-ACUAGCUU------CCGc -5'
23866 3' -54.7 NC_005262.1 + 21560 0.7 0.560314
Target:  5'- aGAugC-CGCC-GCCUGGaaaCGAGGGCGg -3'
miRNA:   3'- -CUugGaGUGGuCGGACUa--GCUUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.