miRNA display CGI


Results 21 - 37 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23866 5' -53.2 NC_005262.1 + 38894 0.67 0.837636
Target:  5'- cGGCGuccuccggcUGGCCGAGCUCGccuucacgcgccgGCGGa -3'
miRNA:   3'- -CCGUuaaa-----GCCGGUUCGAGCa------------CGCCc -5'
23866 5' -53.2 NC_005262.1 + 40460 0.68 0.756947
Target:  5'- cGGCcGUggUCGaGCgCGuGCUCGUGCGcGGc -3'
miRNA:   3'- -CCGuUAa-AGC-CG-GUuCGAGCACGC-CC- -5'
23866 5' -53.2 NC_005262.1 + 43387 0.66 0.867916
Target:  5'- cGGCGAUgcgagcaUCGGCggCGAGCUCaacgGCGcGGc -3'
miRNA:   3'- -CCGUUAa------AGCCG--GUUCGAGca--CGC-CC- -5'
23866 5' -53.2 NC_005262.1 + 43641 0.66 0.858983
Target:  5'- uGGCGcgUUCGucggucucacuGUCGAGCUgGUGCgucggcaGGGg -3'
miRNA:   3'- -CCGUuaAAGC-----------CGGUUCGAgCACG-------CCC- -5'
23866 5' -53.2 NC_005262.1 + 45421 0.75 0.373966
Target:  5'- cGCAAaacUCGGCCGGGCUUauggGCGGGc -3'
miRNA:   3'- cCGUUaa-AGCCGGUUCGAGca--CGCCC- -5'
23866 5' -53.2 NC_005262.1 + 46253 0.66 0.842887
Target:  5'- cGGCGcgUUCGcGCaagGGCUCaUGCaGGGc -3'
miRNA:   3'- -CCGUuaAAGC-CGgu-UCGAGcACG-CCC- -5'
23866 5' -53.2 NC_005262.1 + 46830 0.68 0.756947
Target:  5'- gGGCAAUaUCGguGCCcGGCUUG-GCGGu -3'
miRNA:   3'- -CCGUUAaAGC--CGGuUCGAGCaCGCCc -5'
23866 5' -53.2 NC_005262.1 + 49469 0.68 0.787134
Target:  5'- cGCAAcUUCGccGCCcAGCUCG-GCGGu -3'
miRNA:   3'- cCGUUaAAGC--CGGuUCGAGCaCGCCc -5'
23866 5' -53.2 NC_005262.1 + 50273 0.67 0.804571
Target:  5'- gGGCGcgcccgcgcCGGCCGAGCcCGUGaCGGc -3'
miRNA:   3'- -CCGUuaaa-----GCCGGUUCGaGCAC-GCCc -5'
23866 5' -53.2 NC_005262.1 + 51024 0.66 0.851462
Target:  5'- gGGCGuuua-GGCCGuuGUUCGUaugcaGCGGGa -3'
miRNA:   3'- -CCGUuaaagCCGGUu-CGAGCA-----CGCCC- -5'
23866 5' -53.2 NC_005262.1 + 52291 0.67 0.825085
Target:  5'- aGGCAcacgaugCaGCCGAGCUCGgcgacGCGGc -3'
miRNA:   3'- -CCGUuaaa---GcCGGUUCGAGCa----CGCCc -5'
23866 5' -53.2 NC_005262.1 + 52564 0.67 0.825085
Target:  5'- cGCGAUcgUCGcuGUCGAGCUCG-GCGcGGc -3'
miRNA:   3'- cCGUUAa-AGC--CGGUUCGAGCaCGC-CC- -5'
23866 5' -53.2 NC_005262.1 + 53122 0.66 0.859807
Target:  5'- uGCAGgaugcgUUCGGCCu-GCUCGUuuGCGa- -3'
miRNA:   3'- cCGUUa-----AAGCCGGuuCGAGCA--CGCcc -5'
23866 5' -53.2 NC_005262.1 + 54403 0.67 0.796889
Target:  5'- gGGCAAcgUCGuGCgCAAGCUC--GCGGa -3'
miRNA:   3'- -CCGUUaaAGC-CG-GUUCGAGcaCGCCc -5'
23866 5' -53.2 NC_005262.1 + 57287 0.66 0.842887
Target:  5'- cGGCGAggUCGGCgCGcugaUCGUcgaGCGGGu -3'
miRNA:   3'- -CCGUUaaAGCCG-GUucg-AGCA---CGCCC- -5'
23866 5' -53.2 NC_005262.1 + 60937 1.13 0.00119
Target:  5'- cGGCAAUUUCGGCCAAGCUCGUGCGGGc -3'
miRNA:   3'- -CCGUUAAAGCCGGUUCGAGCACGCCC- -5'
23866 5' -53.2 NC_005262.1 + 62821 0.68 0.746615
Target:  5'- gGGCGAcgUgccgacgaUCGGCCAcGGCUCGacGCGGu -3'
miRNA:   3'- -CCGUUa-A--------AGCCGGU-UCGAGCa-CGCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.