Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23866 | 5' | -53.2 | NC_005262.1 | + | 35531 | 0.77 | 0.300884 |
Target: 5'- uGGCAGggcUUCGGCCAAgccgcgaugucGCUCGccggcGCGGGa -3' miRNA: 3'- -CCGUUa--AAGCCGGUU-----------CGAGCa----CGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 7516 | 0.66 | 0.87578 |
Target: 5'- cGCAuccaUCGGgCAGGUUCG-GCGGc -3' miRNA: 3'- cCGUuaa-AGCCgGUUCGAGCaCGCCc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 43387 | 0.66 | 0.867916 |
Target: 5'- cGGCGAUgcgagcaUCGGCggCGAGCUCaacgGCGcGGc -3' miRNA: 3'- -CCGUUAa------AGCCG--GUUCGAGca--CGC-CC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 9231 | 0.66 | 0.859807 |
Target: 5'- uGGCG---UCGGCCGccAG-UCGUGaGGGg -3' miRNA: 3'- -CCGUuaaAGCCGGU--UCgAGCACgCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 46253 | 0.66 | 0.842887 |
Target: 5'- cGGCGcgUUCGcGCaagGGCUCaUGCaGGGc -3' miRNA: 3'- -CCGUuaAAGC-CGgu-UCGAGcACG-CCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 50273 | 0.67 | 0.804571 |
Target: 5'- gGGCGcgcccgcgcCGGCCGAGCcCGUGaCGGc -3' miRNA: 3'- -CCGUuaaa-----GCCGGUUCGaGCAC-GCCc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 54403 | 0.67 | 0.796889 |
Target: 5'- gGGCAAcgUCGuGCgCAAGCUC--GCGGa -3' miRNA: 3'- -CCGUUaaAGC-CG-GUUCGAGcaCGCCc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 35649 | 0.67 | 0.796889 |
Target: 5'- gGGCGAUgggcuacUCGguGCCGcAGCUCGUgcucacgucgaGCGGGc -3' miRNA: 3'- -CCGUUAa------AGC--CGGU-UCGAGCA-----------CGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 11584 | 0.68 | 0.787134 |
Target: 5'- cGGCGg---CGGCCAGcGCUCGaGCGa- -3' miRNA: 3'- -CCGUuaaaGCCGGUU-CGAGCaCGCcc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 26236 | 0.68 | 0.777217 |
Target: 5'- uGGCuccaggGGCUcGGcCUCGUGUGGGa -3' miRNA: 3'- -CCGuuaaagCCGGuUC-GAGCACGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 33924 | 0.76 | 0.331935 |
Target: 5'- cGGCGGU----GCCGAGCUCGcgGCGGGc -3' miRNA: 3'- -CCGUUAaagcCGGUUCGAGCa-CGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 45421 | 0.75 | 0.373966 |
Target: 5'- cGCAAaacUCGGCCGGGCUUauggGCGGGc -3' miRNA: 3'- cCGUUaa-AGCCGGUUCGAGca--CGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 32844 | 0.73 | 0.488433 |
Target: 5'- cGGCGacaagGUUUCGGCCc-GCaCGUGCGGc -3' miRNA: 3'- -CCGU-----UAAAGCCGGuuCGaGCACGCCc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 24899 | 0.72 | 0.54507 |
Target: 5'- aGGCGAgcUCGGCCAgccggaggacgccgaGGCaUG-GCGGGa -3' miRNA: 3'- -CCGUUaaAGCCGGU---------------UCGaGCaCGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 5031 | 0.71 | 0.573108 |
Target: 5'- cGGCAGUUgcucgcCGGCCGGcGCcugaUCG-GCGGGc -3' miRNA: 3'- -CCGUUAAa-----GCCGGUU-CG----AGCaCGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 32889 | 0.69 | 0.693448 |
Target: 5'- cGCGucgaacgUCGGCCAAGC-CG-GCGGc -3' miRNA: 3'- cCGUuaa----AGCCGGUUCGaGCaCGCCc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 62821 | 0.68 | 0.746615 |
Target: 5'- gGGCGAcgUgccgacgaUCGGCCAcGGCUCGacGCGGu -3' miRNA: 3'- -CCGUUa-A--------AGCCGGU-UCGAGCa-CGCCc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 60937 | 1.13 | 0.00119 |
Target: 5'- cGGCAAUUUCGGCCAAGCUCGUGCGGGc -3' miRNA: 3'- -CCGUUAAAGCCGGUUCGAGCACGCCC- -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 53122 | 0.66 | 0.859807 |
Target: 5'- uGCAGgaugcgUUCGGCCu-GCUCGUuuGCGa- -3' miRNA: 3'- cCGUUa-----AAGCCGGuuCGAGCA--CGCcc -5' |
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23866 | 5' | -53.2 | NC_005262.1 | + | 17347 | 0.66 | 0.859807 |
Target: 5'- cGGCAuucgggucCGGCgCGGGCggcgCG-GCGGGc -3' miRNA: 3'- -CCGUuaaa----GCCG-GUUCGa---GCaCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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