miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23867 3' -59.2 NC_005262.1 + 36244 0.66 0.566051
Target:  5'- cGGCGUCcucgccggGGCuGAGCuCGC--CCUCGUCg -3'
miRNA:   3'- -CCGUAGa-------UCG-CUCG-GCGccGGAGCAG- -5'
23867 3' -59.2 NC_005262.1 + 18976 0.66 0.555601
Target:  5'- uGCGUC--GCGAGCUGCuGGUCagugaccuucuUCGUCa -3'
miRNA:   3'- cCGUAGauCGCUCGGCG-CCGG-----------AGCAG- -5'
23867 3' -59.2 NC_005262.1 + 48294 0.66 0.545208
Target:  5'- uGCAgcUCgccggugAGCGAGCCGCcGCgCUCGg- -3'
miRNA:   3'- cCGU--AGa------UCGCUCGGCGcCG-GAGCag -5'
23867 3' -59.2 NC_005262.1 + 56515 0.66 0.545208
Target:  5'- aGCAUCUGGaCGcGCCGUGGuucCCggcaucCGUCg -3'
miRNA:   3'- cCGUAGAUC-GCuCGGCGCC---GGa-----GCAG- -5'
23867 3' -59.2 NC_005262.1 + 30138 0.66 0.544173
Target:  5'- cGGCGaCcAGCGAGgCGCGcucgucaGCCUCGg- -3'
miRNA:   3'- -CCGUaGaUCGCUCgGCGC-------CGGAGCag -5'
23867 3' -59.2 NC_005262.1 + 14561 0.66 0.534879
Target:  5'- cGGCA---GGCGucucGCCGCGGCgCUCa-- -3'
miRNA:   3'- -CCGUagaUCGCu---CGGCGCCG-GAGcag -5'
23867 3' -59.2 NC_005262.1 + 53235 0.66 0.534879
Target:  5'- cGGUAcgCU-GCGGcuGCgCGCGGCCggucgCGUCg -3'
miRNA:   3'- -CCGUa-GAuCGCU--CG-GCGCCGGa----GCAG- -5'
23867 3' -59.2 NC_005262.1 + 10772 0.66 0.534879
Target:  5'- cGUGUaCUGGCuGGUCGCGGCCaugcUGUCg -3'
miRNA:   3'- cCGUA-GAUCGcUCGGCGCCGGa---GCAG- -5'
23867 3' -59.2 NC_005262.1 + 15615 0.66 0.524619
Target:  5'- cGGCAgg-AGCgcaucGAGgCGCGGCUgaacgCGUCg -3'
miRNA:   3'- -CCGUagaUCG-----CUCgGCGCCGGa----GCAG- -5'
23867 3' -59.2 NC_005262.1 + 42253 0.66 0.524619
Target:  5'- cGGCAUCUGcuucaggaccGCGAGCUGCaccGCUUCcGUg -3'
miRNA:   3'- -CCGUAGAU----------CGCUCGGCGc--CGGAG-CAg -5'
23867 3' -59.2 NC_005262.1 + 14438 0.67 0.504332
Target:  5'- cGCGUCgccgagucgucAGCGAG-CGCGGCgcgcgccugCUCGUCg -3'
miRNA:   3'- cCGUAGa----------UCGCUCgGCGCCG---------GAGCAG- -5'
23867 3' -59.2 NC_005262.1 + 38327 0.67 0.504332
Target:  5'- uGCAgUUGGCGAGCgGCaucGCCUCG-Cg -3'
miRNA:   3'- cCGUaGAUCGCUCGgCGc--CGGAGCaG- -5'
23867 3' -59.2 NC_005262.1 + 33485 0.67 0.504332
Target:  5'- cGCAUCUcGCucGCgGUcugGGCCUUGUCg -3'
miRNA:   3'- cCGUAGAuCGcuCGgCG---CCGGAGCAG- -5'
23867 3' -59.2 NC_005262.1 + 22332 0.67 0.494316
Target:  5'- cGGCAUCU---GGGCUGCGGUCagCGUa -3'
miRNA:   3'- -CCGUAGAucgCUCGGCGCCGGa-GCAg -5'
23867 3' -59.2 NC_005262.1 + 14016 0.67 0.494316
Target:  5'- gGGCGUCcGGCGcGGCaGCGGCCggagCcUCg -3'
miRNA:   3'- -CCGUAGaUCGC-UCGgCGCCGGa---GcAG- -5'
23867 3' -59.2 NC_005262.1 + 34643 0.67 0.484393
Target:  5'- cGCAUggucGCGcGCCacuCGGCCUCGUCg -3'
miRNA:   3'- cCGUAgau-CGCuCGGc--GCCGGAGCAG- -5'
23867 3' -59.2 NC_005262.1 + 16210 0.67 0.474565
Target:  5'- cGGUcgCUgaaAGCcAGCCGCuucGCUUCGUCg -3'
miRNA:   3'- -CCGuaGA---UCGcUCGGCGc--CGGAGCAG- -5'
23867 3' -59.2 NC_005262.1 + 11079 0.67 0.474565
Target:  5'- -uCGUC-AGC-AG-CGCGGCCUCGUCc -3'
miRNA:   3'- ccGUAGaUCGcUCgGCGCCGGAGCAG- -5'
23867 3' -59.2 NC_005262.1 + 56272 0.67 0.471636
Target:  5'- cGGaCAUCgggcucGGCGAGCagucggcgaagaacCGCGGCUUCGa- -3'
miRNA:   3'- -CC-GUAGa-----UCGCUCG--------------GCGCCGGAGCag -5'
23867 3' -59.2 NC_005262.1 + 53091 0.68 0.445702
Target:  5'- cGGCc----GCGuGCgCGCGGCCUCGaUCu -3'
miRNA:   3'- -CCGuagauCGCuCG-GCGCCGGAGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.