miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23868 3' -52.8 NC_005262.1 + 49560 0.66 0.874284
Target:  5'- --cUGCGuCCUGCUCGUgCGUGGUCg- -3'
miRNA:   3'- cacAUGUcGGACGAGCA-GUACUAGgc -5'
23868 3' -52.8 NC_005262.1 + 4582 0.66 0.849455
Target:  5'- ---gGCGGCgCUGCUCGggCGUGAgcgcCCGc -3'
miRNA:   3'- cacaUGUCG-GACGAGCa-GUACUa---GGC- -5'
23868 3' -52.8 NC_005262.1 + 53131 0.66 0.849455
Target:  5'- -cGUuCGGCCUGCUCGUUugcGAUgUCGa -3'
miRNA:   3'- caCAuGUCGGACGAGCAGua-CUA-GGC- -5'
23868 3' -52.8 NC_005262.1 + 6415 0.66 0.8407
Target:  5'- -gGUACAGCUUGCUgaucgUGUCGgcGUCCu -3'
miRNA:   3'- caCAUGUCGGACGA-----GCAGUacUAGGc -5'
23868 3' -52.8 NC_005262.1 + 13254 0.66 0.8407
Target:  5'- -gGUGCgcgAGCCUGCUCaUCAgcaccaGUCCGa -3'
miRNA:   3'- caCAUG---UCGGACGAGcAGUac----UAGGC- -5'
23868 3' -52.8 NC_005262.1 + 47790 0.68 0.773681
Target:  5'- ------cGCCUGCUCGUCGUcGGUgCCGc -3'
miRNA:   3'- cacauguCGGACGAGCAGUA-CUA-GGC- -5'
23868 3' -52.8 NC_005262.1 + 8408 0.68 0.751966
Target:  5'- --aUGCGGCgcucgauCUGCUUGcgCGUGAUCCGg -3'
miRNA:   3'- cacAUGUCG-------GACGAGCa-GUACUAGGC- -5'
23868 3' -52.8 NC_005262.1 + 53886 0.7 0.643987
Target:  5'- gGUGUG-AGCUcgaucgugUGCUCGcCAUGAUCCa -3'
miRNA:   3'- -CACAUgUCGG--------ACGAGCaGUACUAGGc -5'
23868 3' -52.8 NC_005262.1 + 25744 0.71 0.566281
Target:  5'- ---aGCGGCCgugccGUUCGUCGUGAUgCCGa -3'
miRNA:   3'- cacaUGUCGGa----CGAGCAGUACUA-GGC- -5'
23868 3' -52.8 NC_005262.1 + 43544 0.72 0.533621
Target:  5'- aUGUGCcGCCUGC-CGUCcgGAUUCc -3'
miRNA:   3'- cACAUGuCGGACGaGCAGuaCUAGGc -5'
23868 3' -52.8 NC_005262.1 + 34579 0.73 0.45038
Target:  5'- cGUGUGCGcGCCgUGCggCGcCGUGAUCCa -3'
miRNA:   3'- -CACAUGU-CGG-ACGa-GCaGUACUAGGc -5'
23868 3' -52.8 NC_005262.1 + 60189 1.1 0.001622
Target:  5'- cGUGUACAGCCUGCUCGUCAUGAUCCGg -3'
miRNA:   3'- -CACAUGUCGGACGAGCAGUACUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.