miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23869 5' -57.7 NC_005262.1 + 47402 0.69 0.476401
Target:  5'- cCCGGCGGcCGGCCgggGCGGGUucaaAACUGg -3'
miRNA:   3'- cGGUCGCU-GCCGG---CGCUCAug--UUGGC- -5'
23869 5' -57.7 NC_005262.1 + 46774 0.67 0.577401
Target:  5'- aGgCGGCGAcgcgcgguaucaaCGGCgGCGAGccgAUGACCGa -3'
miRNA:   3'- -CgGUCGCU-------------GCCGgCGCUCa--UGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 46397 0.75 0.203322
Target:  5'- cCCAGCGucucggcauuguCGGCCGcCGAGU-CGACCGg -3'
miRNA:   3'- cGGUCGCu-----------GCCGGC-GCUCAuGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 45951 0.66 0.662218
Target:  5'- aGCUGuCGACGGCCGCGuuuccaucucgccAGUu--GCCGg -3'
miRNA:   3'- -CGGUcGCUGCCGGCGC-------------UCAuguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 44953 0.69 0.48624
Target:  5'- cGUCAGgagcaGAUGGCCGCcGAGgcgAgGGCCGa -3'
miRNA:   3'- -CGGUCg----CUGCCGGCG-CUCa--UgUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 44851 0.67 0.578453
Target:  5'- gGCgAauGCGugGGcCCGCGAGgACcGCCa -3'
miRNA:   3'- -CGgU--CGCugCC-GGCGCUCaUGuUGGc -5'
23869 5' -57.7 NC_005262.1 + 44672 0.67 0.5575
Target:  5'- cGCCGGCGACGcGCCcGCGcc--CGAuCCGa -3'
miRNA:   3'- -CGGUCGCUGC-CGG-CGCucauGUU-GGC- -5'
23869 5' -57.7 NC_005262.1 + 43822 0.74 0.244124
Target:  5'- -gCGGCGAcaCGGCCGCGGGc-CGGCCGc -3'
miRNA:   3'- cgGUCGCU--GCCGGCGCUCauGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 43207 0.7 0.410531
Target:  5'- aGCCcuGCGGCGcGCCGCGcGcUGCucGCCGg -3'
miRNA:   3'- -CGGu-CGCUGC-CGGCGCuC-AUGu-UGGC- -5'
23869 5' -57.7 NC_005262.1 + 43013 0.7 0.405151
Target:  5'- gGCCAGUucuuCGGCCGCuaccucgccagcuacGAGUACAucgacccgGCCGg -3'
miRNA:   3'- -CGGUCGcu--GCCGGCG---------------CUCAUGU--------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 42244 0.67 0.575298
Target:  5'- uCCAgGCGGCGGCaucugcuucaggacCGCGAGcUGCA-CCGc -3'
miRNA:   3'- cGGU-CGCUGCCG--------------GCGCUC-AUGUuGGC- -5'
23869 5' -57.7 NC_005262.1 + 41664 0.66 0.642053
Target:  5'- aGCC-GCGGCGGCCaGaCGAuUGcCGGCCa -3'
miRNA:   3'- -CGGuCGCUGCCGG-C-GCUcAU-GUUGGc -5'
23869 5' -57.7 NC_005262.1 + 41565 0.73 0.283134
Target:  5'- gGCCGGCGugGGCgGC----GCGGCCGu -3'
miRNA:   3'- -CGGUCGCugCCGgCGcucaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 41378 0.66 0.63036
Target:  5'- uGCCGGCGAgcaGGCgGCGcucgaucAGUGCgAACgCGg -3'
miRNA:   3'- -CGGUCGCUg--CCGgCGC-------UCAUG-UUG-GC- -5'
23869 5' -57.7 NC_005262.1 + 39233 0.66 0.672798
Target:  5'- -aCGGCGACGGaCGCGAucaGCAggaucacGCCGg -3'
miRNA:   3'- cgGUCGCUGCCgGCGCUca-UGU-------UGGC- -5'
23869 5' -57.7 NC_005262.1 + 39221 0.66 0.642053
Target:  5'- gGCCAGCaagcaGGCGGCCGgGAau-UAugCGa -3'
miRNA:   3'- -CGGUCG-----CUGCCGGCgCUcauGUugGC- -5'
23869 5' -57.7 NC_005262.1 + 38970 0.7 0.392773
Target:  5'- gGCaCGGCGcCGGCCGCGAucGCGAgCu -3'
miRNA:   3'- -CG-GUCGCuGCCGGCGCUcaUGUUgGc -5'
23869 5' -57.7 NC_005262.1 + 38526 0.67 0.567952
Target:  5'- gGCCGGCaagagcuacACGGUCGCGGugACGAUCGg -3'
miRNA:   3'- -CGGUCGc--------UGCCGGCGCUcaUGUUGGC- -5'
23869 5' -57.7 NC_005262.1 + 38447 0.66 0.631423
Target:  5'- cGCCGGaCGACGGCaCGCucGUc--GCCGu -3'
miRNA:   3'- -CGGUC-GCUGCCG-GCGcuCAuguUGGC- -5'
23869 5' -57.7 NC_005262.1 + 37245 0.7 0.410531
Target:  5'- gGCgCAGCGcguCGGCCGCuucgGAGUgGCcGCCGg -3'
miRNA:   3'- -CG-GUCGCu--GCCGGCG----CUCA-UGuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.