miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2387 3' -37 NC_001416.1 + 37717 1.17 0.032829
Target:  5'- cGUUAUAAGCAUUUAAUGCAUUGAUGCc -3'
miRNA:   3'- -CAAUAUUCGUAAAUUACGUAACUACG- -5'
2387 3' -37 NC_001416.1 + 37822 0.71 0.999994
Target:  5'- ----gGGGCAgucag-GCGUUGGUGCu -3'
miRNA:   3'- caauaUUCGUaaauuaCGUAACUACG- -5'
2387 3' -37 NC_001416.1 + 30205 0.7 0.999999
Target:  5'- -----cGGCGUUUGAUGUAUUGcUGg -3'
miRNA:   3'- caauauUCGUAAAUUACGUAACuACg -5'
2387 3' -37 NC_001416.1 + 34690 0.66 1
Target:  5'- -aUAUAAGCgAUUUAAgcuaagaaaacGCAUUaaGAUGCa -3'
miRNA:   3'- caAUAUUCG-UAAAUUa----------CGUAA--CUACG- -5'
2387 3' -37 NC_001416.1 + 47829 0.66 1
Target:  5'- ----aGAGCAaUUGAggcaGCGUUGGUGa -3'
miRNA:   3'- caauaUUCGUaAAUUa---CGUAACUACg -5'
2387 3' -37 NC_001416.1 + 43406 0.66 1
Target:  5'- --cAUGAGCAaaUGAUG-AUUGAUGg -3'
miRNA:   3'- caaUAUUCGUaaAUUACgUAACUACg -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.