miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2387 5' -57.6 NC_001416.1 + 10677 0.66 0.50421
Target:  5'- -cGUACCAgaaaaaugACGCCUGACU-CUggCCAUCu -3'
miRNA:   3'- uuCGUGGU--------UGCGGACUGAcGG--GGUAG- -5'
2387 5' -57.6 NC_001416.1 + 13871 0.69 0.300851
Target:  5'- -uGCGCCAGCGgCUGAucaccucCUGCUCCGgaUCg -3'
miRNA:   3'- uuCGUGGUUGCgGACU-------GACGGGGU--AG- -5'
2387 5' -57.6 NC_001416.1 + 9288 0.71 0.23884
Target:  5'- --aCGCCAgcaGCGCCUG-CUGCCCCugcUCu -3'
miRNA:   3'- uucGUGGU---UGCGGACuGACGGGGu--AG- -5'
2387 5' -57.6 NC_001416.1 + 13533 0.73 0.187368
Target:  5'- aGAGCACC-ACGCUggccGACUGCUCCGc- -3'
miRNA:   3'- -UUCGUGGuUGCGGa---CUGACGGGGUag -5'
2387 5' -57.6 NC_001416.1 + 37752 1.06 0.000598
Target:  5'- aAAGCACCAACGCCUGACUGCCCCAUCc -3'
miRNA:   3'- -UUCGUGGUUGCGGACUGACGGGGUAG- -5'
2387 5' -57.6 NC_001416.1 + 39879 0.7 0.265285
Target:  5'- gAAGCAuCCGuuacCGCCgGACUGCCaaaCGUCa -3'
miRNA:   3'- -UUCGU-GGUu---GCGGaCUGACGGg--GUAG- -5'
2387 5' -57.6 NC_001416.1 + 4550 0.67 0.42298
Target:  5'- cGGUGuCCGGCgacaGCCUGACUGCCCa--- -3'
miRNA:   3'- uUCGU-GGUUG----CGGACUGACGGGguag -5'
2387 5' -57.6 NC_001416.1 + 7014 0.67 0.42298
Target:  5'- aAGGCAUUAACGCCU--CUGCCCguUa -3'
miRNA:   3'- -UUCGUGGUUGCGGAcuGACGGGguAg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.