miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23871 5' -57.1 NC_005262.1 + 52638 0.66 0.713917
Target:  5'- gCGuuGUCgca-GGGCCGCCCgugcgaccGGAGCCa -3'
miRNA:   3'- -GCu-CAGauagCUUGGCGGG--------CCUCGGc -5'
23871 5' -57.1 NC_005262.1 + 23144 0.66 0.703528
Target:  5'- uGGGUCggGUCGcugacGCCguGCCCGuGGCCGg -3'
miRNA:   3'- gCUCAGa-UAGCu----UGG--CGGGCcUCGGC- -5'
23871 5' -57.1 NC_005262.1 + 48539 0.66 0.703528
Target:  5'- uCGcGUC--UCGAugCGCa-GGAGCCGg -3'
miRNA:   3'- -GCuCAGauAGCUugGCGggCCUCGGC- -5'
23871 5' -57.1 NC_005262.1 + 45384 0.66 0.703528
Target:  5'- -aAGUCgcgcucAUUGAGgCGCUCGGaAGCCGg -3'
miRNA:   3'- gcUCAGa-----UAGCUUgGCGGGCC-UCGGC- -5'
23871 5' -57.1 NC_005262.1 + 6639 0.66 0.67201
Target:  5'- gGGGUCgccggggaUGUCGAccgacacgGCCGCgauguacucgCCGGAGCCc -3'
miRNA:   3'- gCUCAG--------AUAGCU--------UGGCG----------GGCCUCGGc -5'
23871 5' -57.1 NC_005262.1 + 38543 0.67 0.650806
Target:  5'- -cGGUCgcggugacgAUCGGcACCGCCgCGG-GCCGg -3'
miRNA:   3'- gcUCAGa--------UAGCU-UGGCGG-GCCuCGGC- -5'
23871 5' -57.1 NC_005262.1 + 61121 0.67 0.639111
Target:  5'- uGAGcuugCUAcggCGGccaggacGCCGCCCGGcGCCGc -3'
miRNA:   3'- gCUCa---GAUa--GCU-------UGGCGGGCCuCGGC- -5'
23871 5' -57.1 NC_005262.1 + 23435 0.67 0.629537
Target:  5'- uCGAcGUCgccgacgAUCGAcaucagcgcGCCGgCCGuGAGCCGa -3'
miRNA:   3'- -GCU-CAGa------UAGCU---------UGGCgGGC-CUCGGC- -5'
23871 5' -57.1 NC_005262.1 + 1045 0.67 0.629537
Target:  5'- uCGAcaaUAggcgCGAuCgGCCCGGAGCCGa -3'
miRNA:   3'- -GCUcagAUa---GCUuGgCGGGCCUCGGC- -5'
23871 5' -57.1 NC_005262.1 + 44663 0.67 0.597672
Target:  5'- cCGGGUucCUAUCGAcauGCUGCCCGaccgcgacaAGCCGu -3'
miRNA:   3'- -GCUCA--GAUAGCU---UGGCGGGCc--------UCGGC- -5'
23871 5' -57.1 NC_005262.1 + 22448 0.68 0.576551
Target:  5'- --cGUCcg-CGAGCUGCcauCCGGGGCCGu -3'
miRNA:   3'- gcuCAGauaGCUUGGCG---GGCCUCGGC- -5'
23871 5' -57.1 NC_005262.1 + 9713 0.68 0.576551
Target:  5'- gCGGGUCguucUUGAACCGCUucgucacggucaCGGuGCCGu -3'
miRNA:   3'- -GCUCAGau--AGCUUGGCGG------------GCCuCGGC- -5'
23871 5' -57.1 NC_005262.1 + 37562 0.69 0.534878
Target:  5'- aCGAGgc---CGAGCC-CCUGGAGCCa -3'
miRNA:   3'- -GCUCagauaGCUUGGcGGGCCUCGGc -5'
23871 5' -57.1 NC_005262.1 + 59128 0.69 0.524619
Target:  5'- cCGAGg----CGAACCGgCCGG-GCCGc -3'
miRNA:   3'- -GCUCagauaGCUUGGCgGGCCuCGGC- -5'
23871 5' -57.1 NC_005262.1 + 12264 0.69 0.524619
Target:  5'- uCGGGcacCUGUCGAucGCgGCCgGcGAGCCGa -3'
miRNA:   3'- -GCUCa--GAUAGCU--UGgCGGgC-CUCGGC- -5'
23871 5' -57.1 NC_005262.1 + 4331 0.69 0.514435
Target:  5'- gCGAGcCUcgCGGGCCGUCCaucGGCCGu -3'
miRNA:   3'- -GCUCaGAuaGCUUGGCGGGcc-UCGGC- -5'
23871 5' -57.1 NC_005262.1 + 28716 0.69 0.504332
Target:  5'- aCGAGUUccgccgCGAggccGCgCGCCCGGAcGCCGu -3'
miRNA:   3'- -GCUCAGaua---GCU----UG-GCGGGCCU-CGGC- -5'
23871 5' -57.1 NC_005262.1 + 34454 0.7 0.427014
Target:  5'- ---uUCgcucCGGGCUGCCCGGAGCCu -3'
miRNA:   3'- gcucAGaua-GCUUGGCGGGCCUCGGc -5'
23871 5' -57.1 NC_005262.1 + 49836 0.71 0.391077
Target:  5'- gGAG-CgcgCGAAUgGCCCGGuGCCGg -3'
miRNA:   3'- gCUCaGauaGCUUGgCGGGCCuCGGC- -5'
23871 5' -57.1 NC_005262.1 + 2532 0.71 0.382406
Target:  5'- uCGAGUCUGUcaCGAACUgGCCCaGGccGCCGg -3'
miRNA:   3'- -GCUCAGAUA--GCUUGG-CGGG-CCu-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.