miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23872 3' -55.9 NC_005262.1 + 4406 0.66 0.688807
Target:  5'- gAugUCGCGCgccugcUGCGCgAGCGcCUGGAg -3'
miRNA:   3'- -UugGGCGUGa-----ACGCG-UUGCuGACCUa -5'
23872 3' -55.9 NC_005262.1 + 32052 0.66 0.688807
Target:  5'- gGACCgUGCGCUUGCGCGacauGCGACcgccGGc- -3'
miRNA:   3'- -UUGG-GCGUGAACGCGU----UGCUGa---CCua -5'
23872 3' -55.9 NC_005262.1 + 18680 0.66 0.677819
Target:  5'- -uCuuGCcCUUGCGCAuauCGGCUGGc- -3'
miRNA:   3'- uuGggCGuGAACGCGUu--GCUGACCua -5'
23872 3' -55.9 NC_005262.1 + 20351 0.66 0.655722
Target:  5'- cGAUCCGCACaaGCGCGucgccguCGAUcGGAUa -3'
miRNA:   3'- -UUGGGCGUGaaCGCGUu------GCUGaCCUA- -5'
23872 3' -55.9 NC_005262.1 + 63643 0.66 0.633536
Target:  5'- uGACCCaGCGgUUGCggGCGAacUGGCUGGAa -3'
miRNA:   3'- -UUGGG-CGUgAACG--CGUU--GCUGACCUa -5'
23872 3' -55.9 NC_005262.1 + 46822 0.67 0.623546
Target:  5'- aGGCCCGCGCgcucgccgagaaaaGCGCGccgaGCGuGCUGGAc -3'
miRNA:   3'- -UUGGGCGUGaa------------CGCGU----UGC-UGACCUa -5'
23872 3' -55.9 NC_005262.1 + 14348 0.67 0.622436
Target:  5'- uGCgaCGUGCUUGCGCGcguCGACUGGc- -3'
miRNA:   3'- uUGg-GCGUGAACGCGUu--GCUGACCua -5'
23872 3' -55.9 NC_005262.1 + 23454 0.67 0.600271
Target:  5'- cGACUgGCGCaUGCGCGGCcuggacgaauGGCUGGGc -3'
miRNA:   3'- -UUGGgCGUGaACGCGUUG----------CUGACCUa -5'
23872 3' -55.9 NC_005262.1 + 6102 0.67 0.589226
Target:  5'- uGAUCCGCACgUUGCGgAACGGC-GGc- -3'
miRNA:   3'- -UUGGGCGUG-AACGCgUUGCUGaCCua -5'
23872 3' -55.9 NC_005262.1 + 29219 0.68 0.556344
Target:  5'- cGGCgCCGCACggcGCGCAcACGACguucGGAUc -3'
miRNA:   3'- -UUG-GGCGUGaa-CGCGU-UGCUGa---CCUA- -5'
23872 3' -55.9 NC_005262.1 + 28801 0.68 0.556344
Target:  5'- gGGCCCGCGCUgcUGCcCGGCuGcCUGGAg -3'
miRNA:   3'- -UUGGGCGUGA--ACGcGUUG-CuGACCUa -5'
23872 3' -55.9 NC_005262.1 + 26994 0.69 0.492426
Target:  5'- cGCCCGC-CgaGCGCGcCGcACUGGAg -3'
miRNA:   3'- uUGGGCGuGaaCGCGUuGC-UGACCUa -5'
23872 3' -55.9 NC_005262.1 + 48494 0.69 0.461744
Target:  5'- cGCCCGCcCaUGCGCGgcgaaucgACGACUGGc- -3'
miRNA:   3'- uUGGGCGuGaACGCGU--------UGCUGACCua -5'
23872 3' -55.9 NC_005262.1 + 38728 0.69 0.451741
Target:  5'- uACCCGaCGCUcaGCGCuGGCGACUGGu- -3'
miRNA:   3'- uUGGGC-GUGAa-CGCG-UUGCUGACCua -5'
23872 3' -55.9 NC_005262.1 + 56330 0.71 0.350299
Target:  5'- uAGCCCGCug--GCGUggcaaGACGGCUGGGUa -3'
miRNA:   3'- -UUGGGCGugaaCGCG-----UUGCUGACCUA- -5'
23872 3' -55.9 NC_005262.1 + 59090 1.04 0.001829
Target:  5'- cAACCCGCACUUGCGCAACGACUGGAUg -3'
miRNA:   3'- -UUGGGCGUGAACGCGUUGCUGACCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.