miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23872 5' -58.5 NC_005262.1 + 49938 0.66 0.594949
Target:  5'- aCGA-CCGGCC-CGG-AUGGCgugacGUUCGa -3'
miRNA:   3'- -GCUaGGCCGGcGCCgUACCGa----CAAGU- -5'
23872 5' -58.5 NC_005262.1 + 52036 0.66 0.584328
Target:  5'- aGGUCgGGCCGCGcCA--GUUGUUCGa -3'
miRNA:   3'- gCUAGgCCGGCGCcGUacCGACAAGU- -5'
23872 5' -58.5 NC_005262.1 + 32518 0.66 0.573744
Target:  5'- gCGAUCuUGGCCGCGGaCGacugcGGCUGccgaUCGa -3'
miRNA:   3'- -GCUAG-GCCGGCGCC-GUa----CCGACa---AGU- -5'
23872 5' -58.5 NC_005262.1 + 39214 0.67 0.542293
Target:  5'- uCGAUCCGGCCagcaagcagGCGGCcgGGaauuaUGcgaagUCGa -3'
miRNA:   3'- -GCUAGGCCGG---------CGCCGuaCCg----ACa----AGU- -5'
23872 5' -58.5 NC_005262.1 + 15769 0.67 0.531932
Target:  5'- gCGG-CCGGCUGCuGCGUGGuCUGg--- -3'
miRNA:   3'- -GCUaGGCCGGCGcCGUACC-GACaagu -5'
23872 5' -58.5 NC_005262.1 + 41280 0.67 0.521643
Target:  5'- aGAUUCGGCCGCG-CGUGgGCgacaUCAa -3'
miRNA:   3'- gCUAGGCCGGCGCcGUAC-CGaca-AGU- -5'
23872 5' -58.5 NC_005262.1 + 60384 0.67 0.511433
Target:  5'- aGGUcgCCGGCCgcaagaucgucgGCGGCAUGGCgcacGUggUCGa -3'
miRNA:   3'- gCUA--GGCCGG------------CGCCGUACCGa---CA--AGU- -5'
23872 5' -58.5 NC_005262.1 + 40457 0.67 0.501306
Target:  5'- cCGAcaucCCGGCCGUgcaugGGCcgGGCUGg--- -3'
miRNA:   3'- -GCUa---GGCCGGCG-----CCGuaCCGACaagu -5'
23872 5' -58.5 NC_005262.1 + 9301 0.67 0.501306
Target:  5'- uCGGUCgGGCCcaGCGGCuucGGCUGc--- -3'
miRNA:   3'- -GCUAGgCCGG--CGCCGua-CCGACaagu -5'
23872 5' -58.5 NC_005262.1 + 57685 0.67 0.491269
Target:  5'- gCGcgCCGGgCGCGGCAaGGUgcuUUCGg -3'
miRNA:   3'- -GCuaGGCCgGCGCCGUaCCGac-AAGU- -5'
23872 5' -58.5 NC_005262.1 + 20445 0.68 0.481326
Target:  5'- aCGGuUCCGGCaccguCGCcGCGUGGgCUGUUCc -3'
miRNA:   3'- -GCU-AGGCCG-----GCGcCGUACC-GACAAGu -5'
23872 5' -58.5 NC_005262.1 + 46922 0.69 0.405662
Target:  5'- gCGGcCCGGCgCGCGGCcgGGCgccugCAu -3'
miRNA:   3'- -GCUaGGCCG-GCGCCGuaCCGacaa-GU- -5'
23872 5' -58.5 NC_005262.1 + 20113 0.7 0.362336
Target:  5'- gCGaAUUCGGCC-CGGCuUGGCUugcGUUCAg -3'
miRNA:   3'- -GC-UAGGCCGGcGCCGuACCGA---CAAGU- -5'
23872 5' -58.5 NC_005262.1 + 58811 0.7 0.345928
Target:  5'- uGAUCgGcGCCGUgaaGGCAUGGCUGcugCGg -3'
miRNA:   3'- gCUAGgC-CGGCG---CCGUACCGACaa-GU- -5'
23872 5' -58.5 NC_005262.1 + 4689 0.71 0.307278
Target:  5'- gGAUCgGGCCGCGGCAUccagucGUUGcgCAa -3'
miRNA:   3'- gCUAGgCCGGCGCCGUAc-----CGACaaGU- -5'
23872 5' -58.5 NC_005262.1 + 37022 0.73 0.22821
Target:  5'- ---aUCGGCgGCGGUucAUGGCUGUUCu -3'
miRNA:   3'- gcuaGGCCGgCGCCG--UACCGACAAGu -5'
23872 5' -58.5 NC_005262.1 + 62378 0.76 0.146203
Target:  5'- aCGAagCGGCCGCGGuCGUGGCgGaUCAu -3'
miRNA:   3'- -GCUagGCCGGCGCC-GUACCGaCaAGU- -5'
23872 5' -58.5 NC_005262.1 + 59125 1.09 0.000614
Target:  5'- cCGAUCCGGCCGCGGCAUGGCUGUUCAa -3'
miRNA:   3'- -GCUAGGCCGGCGCCGUACCGACAAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.