miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23873 3' -56.7 NC_005262.1 + 33946 0.72 0.330196
Target:  5'- gGCaCGCGGCAAGCGA--UC-CCGGAAc -3'
miRNA:   3'- gCG-GCGCUGUUCGCUuaGGuGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 51330 0.73 0.278241
Target:  5'- cCGCgCGCGGCAAGauCGAAUCCGCCa--- -3'
miRNA:   3'- -GCG-GCGCUGUUC--GCUUAGGUGGccuu -5'
23873 3' -56.7 NC_005262.1 + 40538 0.74 0.233011
Target:  5'- uCGUCGCGGCGGGCGGcUCUuacgcGCCGGGc -3'
miRNA:   3'- -GCGGCGCUGUUCGCUuAGG-----UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 24889 0.75 0.210048
Target:  5'- gGCgCGUGACAGGCGAGcucggCCAgCCGGAGg -3'
miRNA:   3'- gCG-GCGCUGUUCGCUUa----GGU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 50964 0.69 0.504198
Target:  5'- aGCCGaCG-CAGGcCGAGUucUCGCCGGAGa -3'
miRNA:   3'- gCGGC-GCuGUUC-GCUUA--GGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 50803 0.68 0.514494
Target:  5'- uCGCCGagGGCAuggAGCGcuUCgCGCCGGAGa -3'
miRNA:   3'- -GCGGCg-CUGU---UCGCuuAG-GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 48675 0.66 0.653508
Target:  5'- aGCUGcCGGCcAGCGcguUCCAgCCGGAc -3'
miRNA:   3'- gCGGC-GCUGuUCGCuu-AGGU-GGCCUu -5'
23873 3' -56.7 NC_005262.1 + 1034 0.66 0.653508
Target:  5'- gGCCGUGGCGuucgacaauaGGCGcGAUCgGcCCGGAGc -3'
miRNA:   3'- gCGGCGCUGU----------UCGC-UUAGgU-GGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 12118 0.66 0.653508
Target:  5'- cCGCCGUGcgcGCGAGCaGAUCgccgCGCUGGAGa -3'
miRNA:   3'- -GCGGCGC---UGUUCGcUUAG----GUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 31299 0.66 0.642677
Target:  5'- uCGCgGCGACAAuGgGucuGUCCGCCGa-- -3'
miRNA:   3'- -GCGgCGCUGUU-CgCu--UAGGUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 42082 0.67 0.631837
Target:  5'- cCGCCGgccaGAuCGAGaCG-AUCUACCGGAAc -3'
miRNA:   3'- -GCGGCg---CU-GUUC-GCuUAGGUGGCCUU- -5'
23873 3' -56.7 NC_005262.1 + 56955 0.67 0.631837
Target:  5'- -uCCGCG-CGGGCGAGUUCGCgGGc- -3'
miRNA:   3'- gcGGCGCuGUUCGCUUAGGUGgCCuu -5'
23873 3' -56.7 NC_005262.1 + 46702 0.67 0.619914
Target:  5'- gCGCCGCGcGCGcaguggacaagccGGCGcAAUCCggcacgACCGGAu -3'
miRNA:   3'- -GCGGCGC-UGU-------------UCGC-UUAGG------UGGCCUu -5'
23873 3' -56.7 NC_005262.1 + 8193 0.67 0.610167
Target:  5'- aCGCCGgaaGGCGccgcAGCGAugAUCCGCgCGGGc -3'
miRNA:   3'- -GCGGCg--CUGU----UCGCU--UAGGUG-GCCUu -5'
23873 3' -56.7 NC_005262.1 + 9995 0.67 0.599355
Target:  5'- aGCCuGCuGGCAAGCGAugUCGCCGaGAu -3'
miRNA:   3'- gCGG-CG-CUGUUCGCUuaGGUGGC-CUu -5'
23873 3' -56.7 NC_005262.1 + 23568 0.67 0.57782
Target:  5'- cCGCCGCGcGCGGGCGcAGgagaUCGCCGuGAAa -3'
miRNA:   3'- -GCGGCGC-UGUUCGC-UUa---GGUGGC-CUU- -5'
23873 3' -56.7 NC_005262.1 + 35639 0.68 0.556459
Target:  5'- gGCaCGCGGCGGGCGAugggCUACuCGGu- -3'
miRNA:   3'- gCG-GCGCUGUUCGCUua--GGUG-GCCuu -5'
23873 3' -56.7 NC_005262.1 + 68 0.68 0.545863
Target:  5'- gGCCGCGGCucGCGAagaaGUCgGCCGc-- -3'
miRNA:   3'- gCGGCGCUGuuCGCU----UAGgUGGCcuu -5'
23873 3' -56.7 NC_005262.1 + 51209 0.76 0.199314
Target:  5'- aGCCGCG-CGGGCGAugcugAUCgCACCGGGc -3'
miRNA:   3'- gCGGCGCuGUUCGCU-----UAG-GUGGCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.