Results 81 - 100 of 138 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23874 | 3' | -63.1 | NC_005262.1 | + | 22247 | 0.69 | 0.219236 |
Target: 5'- aCGCCGGCCGGCcugcGCAucAC-GCCGUc- -3' miRNA: 3'- -GCGGCCGGCCGcu--CGU--UGaCGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 62571 | 0.69 | 0.230395 |
Target: 5'- gGUCGGaggCGGCGAGCu-UUGCCGCc- -3' miRNA: 3'- gCGGCCg--GCCGCUCGuuGACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 50838 | 0.7 | 0.203365 |
Target: 5'- aCGCCGaGCCGGUcGGCGA-UGCCGUc- -3' miRNA: 3'- -GCGGC-CGGCCGcUCGUUgACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 32738 | 0.7 | 0.183763 |
Target: 5'- uGCCGGCCGaccacuccGUGAGCGACgcGgUGCUGa -3' miRNA: 3'- gCGGCCGGC--------CGCUCGUUGa-CgGCGAC- -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 5041 | 0.7 | 0.183763 |
Target: 5'- uCGCCGGCCGGCGccugaucggcgGGCAggcccGCgGCgGCg- -3' miRNA: 3'- -GCGGCCGGCCGC-----------UCGU-----UGaCGgCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 49753 | 0.7 | 0.185645 |
Target: 5'- aCGCCGG-CGGCGcccGCGcccgaggcuccggccGCUGCCGCg- -3' miRNA: 3'- -GCGGCCgGCCGCu--CGU---------------UGACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 48042 | 0.7 | 0.18097 |
Target: 5'- aGCCGGCCGcGCccGCAAgcgcgucggucgcacCUGCCGCg- -3' miRNA: 3'- gCGGCCGGC-CGcuCGUU---------------GACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 11005 | 0.7 | 0.188501 |
Target: 5'- uCGCaCGGCUGacgaGCGAgGCGGCUGUCGCg- -3' miRNA: 3'- -GCG-GCCGGC----CGCU-CGUUGACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 14055 | 0.7 | 0.193346 |
Target: 5'- gCGCC-GCCGGCGucgguGCGGCUucgGCCGCc- -3' miRNA: 3'- -GCGGcCGGCCGCu----CGUUGA---CGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 5986 | 0.7 | 0.203365 |
Target: 5'- uGCCGGCCGGCu----GCUGCuCGUUGc -3' miRNA: 3'- gCGGCCGGCCGcucguUGACG-GCGAC- -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 27829 | 0.7 | 0.198301 |
Target: 5'- aGCgCGGCCGGUcugacuucaAGguGCUGCCGCg- -3' miRNA: 3'- gCG-GCCGGCCGc--------UCguUGACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 10781 | 0.7 | 0.193346 |
Target: 5'- gCGCCGGgCGcGCGGuacugcugcGCgAGCUGCCGCg- -3' miRNA: 3'- -GCGGCCgGC-CGCU---------CG-UUGACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 46810 | 0.7 | 0.208019 |
Target: 5'- gCGCuCGGCCGGCG-GCAGCagggcaauaucggUGCCcgGCUu -3' miRNA: 3'- -GCG-GCCGGCCGCuCGUUG-------------ACGG--CGAc -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 10456 | 0.7 | 0.188501 |
Target: 5'- uCGCgCGGUCGGCGAgGUAGCgGCgCGCg- -3' miRNA: 3'- -GCG-GCCGGCCGCU-CGUUGaCG-GCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 9932 | 0.7 | 0.208542 |
Target: 5'- uGUCGGCCGGCuuGAGCGcgaucuGCUuGCCGUc- -3' miRNA: 3'- gCGGCCGGCCG--CUCGU------UGA-CGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 14001 | 0.7 | 0.210644 |
Target: 5'- gGCCGGacggugcaggggcguCCGGCGcGGCAGCgGCCGgaGc -3' miRNA: 3'- gCGGCC---------------GGCCGC-UCGUUGaCGGCgaC- -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 19968 | 0.7 | 0.203365 |
Target: 5'- gCGCgCGGCCGGCccGCGGCcgugucGCCGCg- -3' miRNA: 3'- -GCG-GCCGGCCGcuCGUUGa-----CGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 23406 | 0.7 | 0.193346 |
Target: 5'- aGgCGGCgaugCGGCGGGCAGCaugaGCCGCg- -3' miRNA: 3'- gCgGCCG----GCCGCUCGUUGa---CGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 58870 | 0.7 | 0.183763 |
Target: 5'- aCGCCGGCgcagccCGcGCGuuGGCuGCUGCCGCg- -3' miRNA: 3'- -GCGGCCG------GC-CGC--UCGuUGACGGCGac -5' |
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23874 | 3' | -63.1 | NC_005262.1 | + | 49146 | 0.71 | 0.165848 |
Target: 5'- gGUCGGCaCGGUGGGCGuGCagGCCGCa- -3' miRNA: 3'- gCGGCCG-GCCGCUCGU-UGa-CGGCGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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