miRNA display CGI


Results 81 - 100 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 34169 0.68 0.260394
Target:  5'- uCGCCGGCacgaaGGuCGAGaCGcugcauuccgaGCUGCCGCc- -3'
miRNA:   3'- -GCGGCCGg----CC-GCUC-GU-----------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 61162 0.68 0.254149
Target:  5'- gCGgCGGCgGGCGAGCuGACggGCgCGCg- -3'
miRNA:   3'- -GCgGCCGgCCGCUCG-UUGa-CG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 5321 0.68 0.254149
Target:  5'- aGCUGGCCGGCagGAGCuuCgcaCCGCg- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGuuGac-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 60833 0.67 0.307636
Target:  5'- gCGCCGGCCuacgcgaucGGCGuGGCGAUgGCCGa-- -3'
miRNA:   3'- -GCGGCCGG---------CCGC-UCGUUGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 63567 0.67 0.307636
Target:  5'- cCGCCGccGCCGGCGguAGCGugUcuggcuccGCCGCc- -3'
miRNA:   3'- -GCGGC--CGGCCGC--UCGUugA--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50446 0.67 0.329803
Target:  5'- uCGUCGuGCCGcGCGAGgagGACgGCCGCa- -3'
miRNA:   3'- -GCGGC-CGGC-CGCUCg--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 30880 0.67 0.329803
Target:  5'- uCGCCgagcGGCCGGauGGUGAC-GCCGCUc -3'
miRNA:   3'- -GCGG----CCGGCCgcUCGUUGaCGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 1470 0.67 0.307636
Target:  5'- aCGCCGcccgcucgucuGCCGGC-----GCUGCCGCUGc -3'
miRNA:   3'- -GCGGC-----------CGGCCGcucguUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 50946 0.67 0.322285
Target:  5'- uGCCGGCCGcCGAGCuGaaGCCGaCg- -3'
miRNA:   3'- gCGGCCGGCcGCUCGuUgaCGGC-Gac -5'
23874 3' -63.1 NC_005262.1 + 49883 0.67 0.322285
Target:  5'- aGCCGGCCGGaaaCGGuCGAUUGUCGUc- -3'
miRNA:   3'- gCGGCCGGCC---GCUcGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 13963 0.67 0.303342
Target:  5'- aGCCgcuggugcaccagggGGCCGGUGGGCGAa---CGCUGg -3'
miRNA:   3'- gCGG---------------CCGGCCGCUCGUUgacgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 33657 0.67 0.286626
Target:  5'- cCGCCGGCgcuuCGGCGAcCAGCaGCgGCa- -3'
miRNA:   3'- -GCGGCCG----GCCGCUcGUUGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 38976 0.67 0.300504
Target:  5'- gCGCCGGCCGcgaucGCGAGCucgcGCUuGCC-CUu -3'
miRNA:   3'- -GCGGCCGGC-----CGCUCGu---UGA-CGGcGAc -5'
23874 3' -63.1 NC_005262.1 + 40456 0.67 0.300504
Target:  5'- aCGCCGGCCguGGuCGAGCGcgUGCuCGUg- -3'
miRNA:   3'- -GCGGCCGG--CC-GCUCGUugACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 20576 0.67 0.286626
Target:  5'- aGCagcCCGGCGAGCAGCgcgcggcgcGCCGCa- -3'
miRNA:   3'- gCGgccGGCCGCUCGUUGa--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 12614 0.67 0.307636
Target:  5'- aGCgGGCCGccGCGucGuCGGCUGCCuGCUGc -3'
miRNA:   3'- gCGgCCGGC--CGCu-C-GUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 55508 0.67 0.314164
Target:  5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3'
miRNA:   3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 8954 0.67 0.314896
Target:  5'- aGCCGGUCGGCGcGCuGCgUGUCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCuCGuUG-ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 40980 0.67 0.307636
Target:  5'- gCGUCGGguuuCUGGCG-GCGGCgcucGCUGCUGa -3'
miRNA:   3'- -GCGGCC----GGCCGCuCGUUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 60624 0.67 0.322285
Target:  5'- aCGCCaugcgcacGCUGGCGAGCGGCgagcaCCGCg- -3'
miRNA:   3'- -GCGGc-------CGGCCGCUCGUUGac---GGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.