miRNA display CGI


Results 101 - 120 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 8954 0.67 0.314896
Target:  5'- aGCCGGUCGGCGcGCuGCgUGUCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCuCGuUG-ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 21382 0.67 0.314896
Target:  5'- gGCCGGCUGGCGccGCcuGAaaGCCGgaGa -3'
miRNA:   3'- gCGGCCGGCCGCu-CG--UUgaCGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 35368 0.67 0.32154
Target:  5'- aGCaCGGCgCGGCccgauucgaccucGAGCAcgUGCCGCUc -3'
miRNA:   3'- gCG-GCCG-GCCG-------------CUCGUugACGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 10852 0.67 0.329045
Target:  5'- uGCC-GCCGGCGAagcccagGCGGCgcagGCCGUc- -3'
miRNA:   3'- gCGGcCGGCCGCU-------CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 40456 0.67 0.300504
Target:  5'- aCGCCGGCCguGGuCGAGCGcgUGCuCGUg- -3'
miRNA:   3'- -GCGGCCGG--CC-GCUCGUugACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 33657 0.67 0.286626
Target:  5'- cCGCCGGCgcuuCGGCGAcCAGCaGCgGCa- -3'
miRNA:   3'- -GCGGCCG----GCCGCUcGUUGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 18562 0.67 0.320055
Target:  5'- uCGCCGaguuGCCGGCGuucaggccgagcccGGCGGacaUGCCGCc- -3'
miRNA:   3'- -GCGGC----CGGCCGC--------------UCGUUg--ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 12614 0.67 0.307636
Target:  5'- aGCgGGCCGccGCGucGuCGGCUGCCuGCUGc -3'
miRNA:   3'- gCGgCCGGC--CGCu-C-GUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 20576 0.67 0.286626
Target:  5'- aGCagcCCGGCGAGCAGCgcgcggcgcGCCGCa- -3'
miRNA:   3'- gCGgccGGCCGCUCGUUGa--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 55508 0.67 0.314164
Target:  5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3'
miRNA:   3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 39502 0.66 0.337449
Target:  5'- aGCaucaGGgCGGCGAGCGucgcgccgAUUGCUGCg- -3'
miRNA:   3'- gCGg---CCgGCCGCUCGU--------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 8235 0.66 0.34444
Target:  5'- aGCCGGCCGGguCGAugcccuugauguuGCu-CUGCUGCg- -3'
miRNA:   3'- gCGGCCGGCC--GCU-------------CGuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 15769 0.66 0.36685
Target:  5'- uGCCGGCCGGCGAcuuccucaucuucgGCGGCaaccCCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCU--------------CGUUGac--GGCgac -5'
23874 3' -63.1 NC_005262.1 + 43839 0.66 0.353125
Target:  5'- gGCCGGCCGcGCGcGGCGguGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGC-CGC-UCGU--UGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 50046 0.66 0.353125
Target:  5'- gCGCCGGCUGcuccCGAGacgaagccggaGACgaagGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGCc---GCUCg----------UUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 56752 0.66 0.361155
Target:  5'- cCGCCGcGCUGGCGucgGGCGACgaG-CGCUa -3'
miRNA:   3'- -GCGGC-CGGCCGC---UCGUUGa-CgGCGAc -5'
23874 3' -63.1 NC_005262.1 + 4722 0.66 0.364402
Target:  5'- uGCgGGuuGGUGAGCAGgcggugcucgagcucCUGCCGg-- -3'
miRNA:   3'- gCGgCCggCCGCUCGUU---------------GACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 48678 0.66 0.36931
Target:  5'- uGCCGGCCaGCGcguuccAGCcgGAC-GCCGCg- -3'
miRNA:   3'- gCGGCCGGcCGC------UCG--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 54531 0.66 0.375094
Target:  5'- aGCUGGgccagaauuggauuCCGGCcAGCGACgucGCCGCg- -3'
miRNA:   3'- gCGGCC--------------GGCCGcUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 63018 0.66 0.345223
Target:  5'- uGUCGGCCaguacGGCaucGGCAACUGgCGCa- -3'
miRNA:   3'- gCGGCCGG-----CCGc--UCGUUGACgGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.