miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 30260 0.66 0.380938
Target:  5'- aGCUcgacgaccugaacaaGGCCGaGCGGGCAAUcgaGCgCGCUGu -3'
miRNA:   3'- gCGG---------------CCGGC-CGCUCGUUGa--CG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 30431 0.69 0.213831
Target:  5'- aCGaucaCGGCCGGCGgguugucgaucGGCGGCacggUGCCGCg- -3'
miRNA:   3'- -GCg---GCCGGCCGC-----------UCGUUG----ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 30880 0.67 0.329803
Target:  5'- uCGCCgagcGGCCGGauGGUGAC-GCCGCUc -3'
miRNA:   3'- -GCGG----CCGGCCgcUCGUUGaCGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 32738 0.7 0.183763
Target:  5'- uGCCGGCCGaccacuccGUGAGCGACgcGgUGCUGa -3'
miRNA:   3'- gCGGCCGGC--------CGCUCGUUGa-CgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 33657 0.67 0.286626
Target:  5'- cCGCCGGCgcuuCGGCGAcCAGCaGCgGCa- -3'
miRNA:   3'- -GCGGCCG----GCCGCUcGUUGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 33898 0.71 0.165848
Target:  5'- gCGUCGGCCGGCGgcccgaucgguAGCGGCggUGCCGa-- -3'
miRNA:   3'- -GCGGCCGGCCGC-----------UCGUUG--ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 34132 0.71 0.169737
Target:  5'- gGCgGGCUGcgcgggcGCGGGCGGCaUGCCGCUc -3'
miRNA:   3'- gCGgCCGGC-------CGCUCGUUG-ACGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 34169 0.68 0.260394
Target:  5'- uCGCCGGCacgaaGGuCGAGaCGcugcauuccgaGCUGCCGCc- -3'
miRNA:   3'- -GCGGCCGg----CC-GCUC-GU-----------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 35368 0.67 0.32154
Target:  5'- aGCaCGGCgCGGCccgauucgaccucGAGCAcgUGCCGCUc -3'
miRNA:   3'- gCG-GCCG-GCCG-------------CUCGUugACGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 35627 0.69 0.230395
Target:  5'- uCGuCCGGCaacggcacgCGGCGGGCGAUgggcuacucggUGCCGCa- -3'
miRNA:   3'- -GC-GGCCG---------GCCGCUCGUUG-----------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 38044 0.69 0.236152
Target:  5'- uCGCgGGCC-GUGAGCGGCUuGCCGgcCUGc -3'
miRNA:   3'- -GCGgCCGGcCGCUCGUUGA-CGGC--GAC- -5'
23874 3' -63.1 NC_005262.1 + 38260 0.66 0.345223
Target:  5'- cCGCCGcGCaCGGaCGucGCGACgcggaUGCUGCUGu -3'
miRNA:   3'- -GCGGC-CG-GCC-GCu-CGUUG-----ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 38521 0.67 0.286626
Target:  5'- gGCaCGGCCGGCaaGAGCuacACgGUCGCg- -3'
miRNA:   3'- gCG-GCCGGCCG--CUCGu--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 38976 0.67 0.300504
Target:  5'- gCGCCGGCCGcgaucGCGAGCucgcGCUuGCC-CUu -3'
miRNA:   3'- -GCGGCCGGC-----CGCUCGu---UGA-CGGcGAc -5'
23874 3' -63.1 NC_005262.1 + 39502 0.66 0.337449
Target:  5'- aGCaucaGGgCGGCGAGCGucgcgccgAUUGCUGCg- -3'
miRNA:   3'- gCGg---CCgGCCGCUCGU--------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 39588 0.75 0.090308
Target:  5'- uGCCGGCgCaGCGucGCGGCUGCCGCc- -3'
miRNA:   3'- gCGGCCG-GcCGCu-CGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 40456 0.67 0.300504
Target:  5'- aCGCCGGCCguGGuCGAGCGcgUGCuCGUg- -3'
miRNA:   3'- -GCGGCCGG--CC-GCUCGUugACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 40561 0.68 0.279878
Target:  5'- gCGCCGGgcaacaCCGGCGGugccGCGACcGUCGCg- -3'
miRNA:   3'- -GCGGCC------GGCCGCU----CGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 40980 0.67 0.307636
Target:  5'- gCGUCGGguuuCUGGCG-GCGGCgcucGCUGCUGa -3'
miRNA:   3'- -GCGGCC----GGCCGCuCGUUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 41561 0.82 0.026175
Target:  5'- gGCCGGCCGGCGugGGCGGCgcgGCCGUg- -3'
miRNA:   3'- gCGGCCGGCCGC--UCGUUGa--CGGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.