miRNA display CGI


Results 41 - 60 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 49753 0.7 0.185645
Target:  5'- aCGCCGG-CGGCGcccGCGcccgaggcuccggccGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGCCGCu--CGU---------------UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49718 0.72 0.14567
Target:  5'- uGCCGGgCGGCGAaccgGCGGCcgaaGCCGCa- -3'
miRNA:   3'- gCGGCCgGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49517 0.69 0.230395
Target:  5'- uCGCCgagGGCCuGCucGAGgAGCUGCCGCa- -3'
miRNA:   3'- -GCGG---CCGGcCG--CUCgUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49146 0.71 0.165848
Target:  5'- gGUCGGCaCGGUGGGCGuGCagGCCGCa- -3'
miRNA:   3'- gCGGCCG-GCCGCUCGU-UGa-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48678 0.66 0.36931
Target:  5'- uGCCGGCCaGCGcguuccAGCcgGAC-GCCGCg- -3'
miRNA:   3'- gCGGCCGGcCGC------UCG--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48297 0.72 0.131167
Target:  5'- aGCUcGCCGGUGAGCgAGCcGCCGCg- -3'
miRNA:   3'- gCGGcCGGCCGCUCG-UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48042 0.7 0.18097
Target:  5'- aGCCGGCCGcGCccGCAAgcgcgucggucgcacCUGCCGCg- -3'
miRNA:   3'- gCGGCCGGC-CGcuCGUU---------------GACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48039 0.66 0.345223
Target:  5'- uCGCCGGCCGGC-AGguGCU-UCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcUCguUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 47714 0.67 0.300504
Target:  5'- gCGCCGGgCGGCG-GCuc--GCCGcCUGu -3'
miRNA:   3'- -GCGGCCgGCCGCuCGuugaCGGC-GAC- -5'
23874 3' -63.1 NC_005262.1 + 47408 0.66 0.353125
Target:  5'- gGCCGGCCggGGCGGGUucaaAACUgGuuGCc- -3'
miRNA:   3'- gCGGCCGG--CCGCUCG----UUGA-CggCGac -5'
23874 3' -63.1 NC_005262.1 + 46810 0.7 0.208019
Target:  5'- gCGCuCGGCCGGCG-GCAGCagggcaauaucggUGCCcgGCUu -3'
miRNA:   3'- -GCG-GCCGGCCGCuCGUUG-------------ACGG--CGAc -5'
23874 3' -63.1 NC_005262.1 + 46128 0.73 0.122467
Target:  5'- uCGCCGcuuccagcucggcgcGCUGGCGGGCGAucuCUGCCuGCUGc -3'
miRNA:   3'- -GCGGC---------------CGGCCGCUCGUU---GACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 45265 0.72 0.141912
Target:  5'- uGCCGGUCGGggcuauagcuuCGAGguGCUGCgCGCUc -3'
miRNA:   3'- gCGGCCGGCC-----------GCUCguUGACG-GCGAc -5'
23874 3' -63.1 NC_005262.1 + 44337 0.66 0.352329
Target:  5'- gGCCGuCCGGUGAGCAucgaggccaacGCccagcgcuucagaUGCCGCg- -3'
miRNA:   3'- gCGGCcGGCCGCUCGU-----------UG-------------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 44175 0.71 0.165848
Target:  5'- aGCgCGG-CGGCGAGCucaaUGCCGUUGu -3'
miRNA:   3'- gCG-GCCgGCCGCUCGuug-ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 43839 0.66 0.353125
Target:  5'- gGCCGGCCGcGCGcGGCGguGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGC-CGC-UCGU--UGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 42380 0.73 0.124425
Target:  5'- aCGUCGGCCGucGCGAGCucgGACcagUGCCGCa- -3'
miRNA:   3'- -GCGGCCGGC--CGCUCG---UUG---ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 41682 0.69 0.236152
Target:  5'- cCGCCGGCacCGGCaucGGCAucuaUGCCGCa- -3'
miRNA:   3'- -GCGGCCG--GCCGc--UCGUug--ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 41561 0.82 0.026175
Target:  5'- gGCCGGCCGGCGugGGCGGCgcgGCCGUg- -3'
miRNA:   3'- gCGGCCGGCCGC--UCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 40980 0.67 0.307636
Target:  5'- gCGUCGGguuuCUGGCG-GCGGCgcucGCUGCUGa -3'
miRNA:   3'- -GCGGCC----GGCCGCuCGUUGa---CGGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.