miRNA display CGI


Results 41 - 60 of 138 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 56788 0.71 0.159132
Target:  5'- aGCUGGCCGGCcugaaggccgacgucGAGCGGCUGgaGCg- -3'
miRNA:   3'- gCGGCCGGCCG---------------CUCGUUGACggCGac -5'
23874 3' -63.1 NC_005262.1 + 49718 0.72 0.14567
Target:  5'- uGCCGGgCGGCGAaccgGCGGCcgaaGCCGCa- -3'
miRNA:   3'- gCGGCCgGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50283 0.72 0.131167
Target:  5'- gCGCCGGCCGaGCccGUGACgGCCGCg- -3'
miRNA:   3'- -GCGGCCGGC-CGcuCGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 30106 0.74 0.100558
Target:  5'- aCGCCGGCCGccGCGaAGCccacGAUcgUGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGC--CGC-UCG----UUG--ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 57216 0.75 0.08328
Target:  5'- uGCCGGUCGGCGGcaucGCGACgcgcGCCGCc- -3'
miRNA:   3'- gCGGCCGGCCGCU----CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 32738 0.7 0.183763
Target:  5'- uGCCGGCCGaccacuccGUGAGCGACgcGgUGCUGa -3'
miRNA:   3'- gCGGCCGGC--------CGCUCGUUGa-CgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 58870 0.7 0.183763
Target:  5'- aCGCCGGCgcagccCGcGCGuuGGCuGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCG------GC-CGC--UCGuUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 56909 0.69 0.236152
Target:  5'- aCGCUcGCCGGCGAGaucaagGCCGCg- -3'
miRNA:   3'- -GCGGcCGGCCGCUCguuga-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 52582 0.69 0.236152
Target:  5'- aGCCGaGUCGGCGA-CGACUaCCGCg- -3'
miRNA:   3'- gCGGC-CGGCCGCUcGUUGAcGGCGac -5'
23874 3' -63.1 NC_005262.1 + 41682 0.69 0.236152
Target:  5'- cCGCCGGCacCGGCaucGGCAucuaUGCCGCa- -3'
miRNA:   3'- -GCGGCCG--GCCGc--UCGUug--ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49517 0.69 0.230395
Target:  5'- uCGCCgagGGCCuGCucGAGgAGCUGCCGCa- -3'
miRNA:   3'- -GCGG---CCGGcCG--CUCgUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 62571 0.69 0.230395
Target:  5'- gGUCGGaggCGGCGAGCu-UUGCCGCc- -3'
miRNA:   3'- gCGGCCg--GCCGCUCGuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 35627 0.69 0.230395
Target:  5'- uCGuCCGGCaacggcacgCGGCGGGCGAUgggcuacucggUGCCGCa- -3'
miRNA:   3'- -GC-GGCCG---------GCCGCUCGUUG-----------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 22247 0.69 0.219236
Target:  5'- aCGCCGGCCGGCcugcGCAucAC-GCCGUc- -3'
miRNA:   3'- -GCGGCCGGCCGcu--CGU--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 5986 0.7 0.203365
Target:  5'- uGCCGGCCGGCu----GCUGCuCGUUGc -3'
miRNA:   3'- gCGGCCGGCCGcucguUGACG-GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 27829 0.7 0.198301
Target:  5'- aGCgCGGCCGGUcugacuucaAGguGCUGCCGCg- -3'
miRNA:   3'- gCG-GCCGGCCGc--------UCguUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 10781 0.7 0.193346
Target:  5'- gCGCCGGgCGcGCGGuacugcugcGCgAGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGC-CGCU---------CG-UUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 23406 0.7 0.193346
Target:  5'- aGgCGGCgaugCGGCGGGCAGCaugaGCCGCg- -3'
miRNA:   3'- gCgGCCG----GCCGCUCGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 11005 0.7 0.188501
Target:  5'- uCGCaCGGCUGacgaGCGAgGCGGCUGUCGCg- -3'
miRNA:   3'- -GCG-GCCGGC----CGCU-CGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49753 0.7 0.185645
Target:  5'- aCGCCGG-CGGCGcccGCGcccgaggcuccggccGCUGCCGCg- -3'
miRNA:   3'- -GCGGCCgGCCGCu--CGU---------------UGACGGCGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.