miRNA display CGI


Results 121 - 138 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 21382 0.67 0.314896
Target:  5'- gGCCGGCUGGCGccGCcuGAaaGCCGgaGa -3'
miRNA:   3'- gCGGCCGGCCGCu-CG--UUgaCGGCgaC- -5'
23874 3' -63.1 NC_005262.1 + 8954 0.67 0.314896
Target:  5'- aGCCGGUCGGCGcGCuGCgUGUCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCuCGuUG-ACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 16963 0.69 0.219236
Target:  5'- aCGCCGGCgcgcuuuucuCGGCGAGCGcGCggGCCuGCa- -3'
miRNA:   3'- -GCGGCCG----------GCCGCUCGU-UGa-CGG-CGac -5'
23874 3' -63.1 NC_005262.1 + 6888 0.69 0.224757
Target:  5'- gGCCuugaucucGCCGGCGAGCGugUuGUCGCg- -3'
miRNA:   3'- gCGGc-------CGGCCGCUCGUugA-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 51216 0.69 0.230395
Target:  5'- aCGCCucGCCGGCGgcagcAGCAGCUcgacgagcgccGCCGCg- -3'
miRNA:   3'- -GCGGc-CGGCCGC-----UCGUUGA-----------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 238 0.69 0.234413
Target:  5'- cCGCCGGCggCGGCGGGaCAuuucgcgcggacguACacgcgcugagUGCCGCUGc -3'
miRNA:   3'- -GCGGCCG--GCCGCUC-GU--------------UG----------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 38044 0.69 0.236152
Target:  5'- uCGCgGGCC-GUGAGCGGCUuGCCGgcCUGc -3'
miRNA:   3'- -GCGgCCGGcCGCUCGUUGA-CGGC--GAC- -5'
23874 3' -63.1 NC_005262.1 + 22124 0.68 0.254149
Target:  5'- uGCCGguGCCGGCG-GCGAUgacggcGCCGCc- -3'
miRNA:   3'- gCGGC--CGGCCGCuCGUUGa-----CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 58610 0.68 0.254149
Target:  5'- gCGCCGGCCGcgcccGCGcccGCGACgccgGCCGUc- -3'
miRNA:   3'- -GCGGCCGGC-----CGCu--CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 18381 0.68 0.260394
Target:  5'- aGcCCGGCCGaGUuuuGcGCGGCUGCCuGCUGc -3'
miRNA:   3'- gC-GGCCGGC-CG---CuCGUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 29748 0.68 0.260394
Target:  5'- -uCUGGUCGuCGAGCAACUGCCGa-- -3'
miRNA:   3'- gcGGCCGGCcGCUCGUUGACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 33657 0.67 0.286626
Target:  5'- cCGCCGGCgcuuCGGCGAcCAGCaGCgGCa- -3'
miRNA:   3'- -GCGGCCG----GCCGCUcGUUGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 38976 0.67 0.300504
Target:  5'- gCGCCGGCCGcgaucGCGAGCucgcGCUuGCC-CUu -3'
miRNA:   3'- -GCGGCCGGC-----CGCUCGu---UGA-CGGcGAc -5'
23874 3' -63.1 NC_005262.1 + 40456 0.67 0.300504
Target:  5'- aCGCCGGCCguGGuCGAGCGcgUGCuCGUg- -3'
miRNA:   3'- -GCGGCCGG--CC-GCUCGUugACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 52245 0.67 0.300504
Target:  5'- gCGCgCGugaugcacuucaGCCGGCGAGCGGCcgaGUCGCa- -3'
miRNA:   3'- -GCG-GC------------CGGCCGCUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 12614 0.67 0.307636
Target:  5'- aGCgGGCCGccGCGucGuCGGCUGCCuGCUGc -3'
miRNA:   3'- gCGgCCGGC--CGCu-C-GUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 55508 0.67 0.314164
Target:  5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3'
miRNA:   3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 15440 0.66 0.36931
Target:  5'- aGCCGGCC-GCcAGCAGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGcCGcUCGUUGaCGGCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.