miRNA display CGI


Results 61 - 80 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 55508 0.67 0.314164
Target:  5'- -cUUGGCCGccucgcgagcgacGCGGGCAGCUuccucgGCCGCUGc -3'
miRNA:   3'- gcGGCCGGC-------------CGCUCGUUGA------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 40456 0.67 0.300504
Target:  5'- aCGCCGGCCguGGuCGAGCGcgUGCuCGUg- -3'
miRNA:   3'- -GCGGCCGG--CC-GCUCGUugACG-GCGac -5'
23874 3' -63.1 NC_005262.1 + 18381 0.68 0.260394
Target:  5'- aGcCCGGCCGaGUuuuGcGCGGCUGCCuGCUGc -3'
miRNA:   3'- gC-GGCCGGC-CG---CuCGUUGACGG-CGAC- -5'
23874 3' -63.1 NC_005262.1 + 58610 0.68 0.254149
Target:  5'- gCGCCGGCCGcgcccGCGcccGCGACgccgGCCGUc- -3'
miRNA:   3'- -GCGGCCGGC-----CGCu--CGUUGa---CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 238 0.69 0.234413
Target:  5'- cCGCCGGCggCGGCGGGaCAuuucgcgcggacguACacgcgcugagUGCCGCUGc -3'
miRNA:   3'- -GCGGCCG--GCCGCUC-GU--------------UG----------ACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 51216 0.69 0.230395
Target:  5'- aCGCCucGCCGGCGgcagcAGCAGCUcgacgagcgccGCCGCg- -3'
miRNA:   3'- -GCGGc-CGGCCGC-----UCGUUGA-----------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 57494 0.73 0.124425
Target:  5'- aGgCGGCCGGCGAGCGcaagaaggcgGCgaaggccgaGCUGCUGa -3'
miRNA:   3'- gCgGCCGGCCGCUCGU----------UGa--------CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 3598 0.73 0.127755
Target:  5'- uCGCCGGCCGGCuccuuGcCggUUGCCGCc- -3'
miRNA:   3'- -GCGGCCGGCCGcu---C-GuuGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16055 0.71 0.173262
Target:  5'- uCGCCgcGGCCGGCGgcgcaccagauacaGGCGGCgaGCCGCc- -3'
miRNA:   3'- -GCGG--CCGGCCGC--------------UCGUUGa-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 53300 0.71 0.157492
Target:  5'- uGCUGGCCGccauGCuGGC-GCUGCUGCUGg -3'
miRNA:   3'- gCGGCCGGC----CGcUCGuUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 20179 0.72 0.138607
Target:  5'- gCGCCGguGCCGGCGAGCGucaccugcgcgauauCUGCguucgCGCUGa -3'
miRNA:   3'- -GCGGC--CGGCCGCUCGUu--------------GACG-----GCGAC- -5'
23874 3' -63.1 NC_005262.1 + 5321 0.68 0.254149
Target:  5'- aGCUGGCCGGCagGAGCuuCgcaCCGCg- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGuuGac-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 50046 0.66 0.353125
Target:  5'- gCGCCGGCUGcuccCGAGacgaagccggaGACgaagGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGCc---GCUCg----------UUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 56752 0.66 0.361155
Target:  5'- cCGCCGcGCUGGCGucgGGCGACgaG-CGCUa -3'
miRNA:   3'- -GCGGC-CGGCCGC---UCGUUGa-CgGCGAc -5'
23874 3' -63.1 NC_005262.1 + 48678 0.66 0.36931
Target:  5'- uGCCGGCCaGCGcguuccAGCcgGAC-GCCGCg- -3'
miRNA:   3'- gCGGCCGGcCGC------UCG--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 54531 0.66 0.375094
Target:  5'- aGCUGGgccagaauuggauuCCGGCcAGCGACgucGCCGCg- -3'
miRNA:   3'- gCGGCC--------------GGCCGcUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 29632 0.68 0.248028
Target:  5'- aCGCCGcaaCCGGCaucggcagcGAGCGGCaUGCCGCc- -3'
miRNA:   3'- -GCGGCc--GGCCG---------CUCGUUG-ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 56909 0.69 0.236152
Target:  5'- aCGCUcGCCGGCGAGaucaagGCCGCg- -3'
miRNA:   3'- -GCGGcCGGCCGCUCguuga-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 4722 0.66 0.364402
Target:  5'- uGCgGGuuGGUGAGCAGgcggugcucgagcucCUGCCGg-- -3'
miRNA:   3'- gCGgCCggCCGCUCGUU---------------GACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 32738 0.7 0.183763
Target:  5'- uGCCGGCCGaccacuccGUGAGCGACgcGgUGCUGa -3'
miRNA:   3'- gCGGCCGGC--------CGCUCGUUGa-CgGCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.