miRNA display CGI


Results 81 - 100 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 35627 0.69 0.230395
Target:  5'- uCGuCCGGCaacggcacgCGGCGGGCGAUgggcuacucggUGCCGCa- -3'
miRNA:   3'- -GC-GGCCG---------GCCGCUCGUUG-----------ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 32738 0.7 0.183763
Target:  5'- uGCCGGCCGaccacuccGUGAGCGACgcGgUGCUGa -3'
miRNA:   3'- gCGGCCGGC--------CGCUCGUUGa-CgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 5041 0.7 0.183763
Target:  5'- uCGCCGGCCGGCGccugaucggcgGGCAggcccGCgGCgGCg- -3'
miRNA:   3'- -GCGGCCGGCCGC-----------UCGU-----UGaCGgCGac -5'
23874 3' -63.1 NC_005262.1 + 1121 0.71 0.174601
Target:  5'- cCGCCucuugcucugcGGCCGcuGCGGGCuucgauGCUGCCGCg- -3'
miRNA:   3'- -GCGG-----------CCGGC--CGCUCGu-----UGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 49146 0.71 0.165848
Target:  5'- gGUCGGCaCGGUGGGCGuGCagGCCGCa- -3'
miRNA:   3'- gCGGCCG-GCCGCUCGU-UGa-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 40980 0.67 0.307636
Target:  5'- gCGUCGGguuuCUGGCG-GCGGCgcucGCUGCUGa -3'
miRNA:   3'- -GCGGCC----GGCCGCuCGUUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 49883 0.67 0.322285
Target:  5'- aGCCGGCCGGaaaCGGuCGAUUGUCGUc- -3'
miRNA:   3'- gCGGCCGGCC---GCUcGUUGACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50946 0.67 0.322285
Target:  5'- uGCCGGCCGcCGAGCuGaaGCCGaCg- -3'
miRNA:   3'- gCGGCCGGCcGCUCGuUgaCGGC-Gac -5'
23874 3' -63.1 NC_005262.1 + 48678 0.66 0.36931
Target:  5'- uGCCGGCCaGCGcguuccAGCcgGAC-GCCGCg- -3'
miRNA:   3'- gCGGCCGGcCGC------UCG--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 15769 0.66 0.36685
Target:  5'- uGCCGGCCGGCGAcuuccucaucuucgGCGGCaaccCCGg-- -3'
miRNA:   3'- gCGGCCGGCCGCU--------------CGUUGac--GGCgac -5'
23874 3' -63.1 NC_005262.1 + 4722 0.66 0.364402
Target:  5'- uGCgGGuuGGUGAGCAGgcggugcucgagcucCUGCCGg-- -3'
miRNA:   3'- gCGgCCggCCGCUCGUU---------------GACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 56752 0.66 0.361155
Target:  5'- cCGCCGcGCUGGCGucgGGCGACgaG-CGCUa -3'
miRNA:   3'- -GCGGC-CGGCCGC---UCGUUGa-CgGCGAc -5'
23874 3' -63.1 NC_005262.1 + 50046 0.66 0.353125
Target:  5'- gCGCCGGCUGcuccCGAGacgaagccggaGACgaagGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGCc---GCUCg----------UUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 43839 0.66 0.353125
Target:  5'- gGCCGGCCGcGCGcGGCGguGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGC-CGC-UCGU--UGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 63018 0.66 0.345223
Target:  5'- uGUCGGCCaguacGGCaucGGCAACUGgCGCa- -3'
miRNA:   3'- gCGGCCGG-----CCGc--UCGUUGACgGCGac -5'
23874 3' -63.1 NC_005262.1 + 12115 0.66 0.345223
Target:  5'- gCGCC-GCCGugcgcGCGAGCAGaucGCCGCg- -3'
miRNA:   3'- -GCGGcCGGC-----CGCUCGUUga-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16405 0.66 0.337449
Target:  5'- gGCCGGCCGcCGGGauuCUgcGCCGCg- -3'
miRNA:   3'- gCGGCCGGCcGCUCguuGA--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 50446 0.67 0.329803
Target:  5'- uCGUCGuGCCGcGCGAGgagGACgGCCGCa- -3'
miRNA:   3'- -GCGGC-CGGC-CGCUCg--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 30880 0.67 0.329803
Target:  5'- uCGCCgagcGGCCGGauGGUGAC-GCCGCUc -3'
miRNA:   3'- -GCGG----CCGGCCgcUCGUUGaCGGCGAc -5'
23874 3' -63.1 NC_005262.1 + 60624 0.67 0.322285
Target:  5'- aCGCCaugcgcacGCUGGCGAGCGGCgagcaCCGCg- -3'
miRNA:   3'- -GCGGc-------CGGCCGCUCGUUGac---GGCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.