miRNA display CGI


Results 101 - 120 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23874 3' -63.1 NC_005262.1 + 12115 0.66 0.345223
Target:  5'- gCGCC-GCCGugcgcGCGAGCAGaucGCCGCg- -3'
miRNA:   3'- -GCGGcCGGC-----CGCUCGUUga-CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 63018 0.66 0.345223
Target:  5'- uGUCGGCCaguacGGCaucGGCAACUGgCGCa- -3'
miRNA:   3'- gCGGCCGG-----CCGc--UCGUUGACgGCGac -5'
23874 3' -63.1 NC_005262.1 + 54531 0.66 0.375094
Target:  5'- aGCUGGgccagaauuggauuCCGGCcAGCGACgucGCCGCg- -3'
miRNA:   3'- gCGGCC--------------GGCCGcUCGUUGa--CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 48678 0.66 0.36931
Target:  5'- uGCCGGCCaGCGcguuccAGCcgGAC-GCCGCg- -3'
miRNA:   3'- gCGGCCGGcCGC------UCG--UUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 43839 0.66 0.353125
Target:  5'- gGCCGGCCGcGCGcGGCGguGC-GCCGg-- -3'
miRNA:   3'- gCGGCCGGC-CGC-UCGU--UGaCGGCgac -5'
23874 3' -63.1 NC_005262.1 + 4722 0.66 0.364402
Target:  5'- uGCgGGuuGGUGAGCAGgcggugcucgagcucCUGCCGg-- -3'
miRNA:   3'- gCGgCCggCCGCUCGUU---------------GACGGCgac -5'
23874 3' -63.1 NC_005262.1 + 1470 0.67 0.307636
Target:  5'- aCGCCGcccgcucgucuGCCGGC-----GCUGCCGCUGc -3'
miRNA:   3'- -GCGGC-----------CGGCCGcucguUGACGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 50046 0.66 0.353125
Target:  5'- gCGCCGGCUGcuccCGAGacgaagccggaGACgaagGCCGCUGc -3'
miRNA:   3'- -GCGGCCGGCc---GCUCg----------UUGa---CGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 29632 0.68 0.248028
Target:  5'- aCGCCGcaaCCGGCaucggcagcGAGCGGCaUGCCGCc- -3'
miRNA:   3'- -GCGGCc--GGCCG---------CUCGUUG-ACGGCGac -5'
23874 3' -63.1 NC_005262.1 + 5321 0.68 0.254149
Target:  5'- aGCUGGCCGGCagGAGCuuCgcaCCGCg- -3'
miRNA:   3'- gCGGCCGGCCG--CUCGuuGac-GGCGac -5'
23874 3' -63.1 NC_005262.1 + 40561 0.68 0.279878
Target:  5'- gCGCCGGgcaacaCCGGCGGugccGCGACcGUCGCg- -3'
miRNA:   3'- -GCGGCC------GGCCGCU----CGUUGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 20576 0.67 0.286626
Target:  5'- aGCagcCCGGCGAGCAGCgcgcggcgcGCCGCa- -3'
miRNA:   3'- gCGgccGGCCGCUCGUUGa--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 16996 0.67 0.286626
Target:  5'- cCGCCGGCCGaGCGcGCG-CUcGUCguGCUGa -3'
miRNA:   3'- -GCGGCCGGC-CGCuCGUuGA-CGG--CGAC- -5'
23874 3' -63.1 NC_005262.1 + 38521 0.67 0.286626
Target:  5'- gGCaCGGCCGGCaaGAGCuacACgGUCGCg- -3'
miRNA:   3'- gCG-GCCGGCCG--CUCGu--UGaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 60500 0.67 0.293501
Target:  5'- aCGCCgGGCCGcGCGGcGCAg--GCCGCc- -3'
miRNA:   3'- -GCGG-CCGGC-CGCU-CGUugaCGGCGac -5'
23874 3' -63.1 NC_005262.1 + 47714 0.67 0.300504
Target:  5'- gCGCCGGgCGGCG-GCuc--GCCGcCUGu -3'
miRNA:   3'- -GCGGCCgGCCGCuCGuugaCGGC-GAC- -5'
23874 3' -63.1 NC_005262.1 + 52704 0.67 0.300504
Target:  5'- cCGCCGGCCGaCGccggacgaGGCcGC-GCUGCUGa -3'
miRNA:   3'- -GCGGCCGGCcGC--------UCGuUGaCGGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 13963 0.67 0.303342
Target:  5'- aGCCgcuggugcaccagggGGCCGGUGGGCGAa---CGCUGg -3'
miRNA:   3'- gCGG---------------CCGGCCGCUCGUUgacgGCGAC- -5'
23874 3' -63.1 NC_005262.1 + 63567 0.67 0.307636
Target:  5'- cCGCCGccGCCGGCGguAGCGugUcuggcuccGCCGCc- -3'
miRNA:   3'- -GCGGC--CGGCCGC--UCGUugA--------CGGCGac -5'
23874 3' -63.1 NC_005262.1 + 60833 0.67 0.307636
Target:  5'- gCGCCGGCCuacgcgaucGGCGuGGCGAUgGCCGa-- -3'
miRNA:   3'- -GCGGCCGG---------CCGC-UCGUUGaCGGCgac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.