miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23875 3' -55.1 NC_005262.1 + 58459 1.09 0.001203
Target:  5'- gGGCGUCAUCAAGCGCGGUGCGAAGCUc -3'
miRNA:   3'- -CCGCAGUAGUUCGCGCCACGCUUCGA- -5'
23875 3' -55.1 NC_005262.1 + 12432 0.82 0.096013
Target:  5'- cGGCGUCG-CGgacGGCGCGGUGCcGAGCUg -3'
miRNA:   3'- -CCGCAGUaGU---UCGCGCCACGcUUCGA- -5'
23875 3' -55.1 NC_005262.1 + 49210 0.8 0.134286
Target:  5'- uGGUGUUGUUggGUGCGGUGCGcguGAGCg -3'
miRNA:   3'- -CCGCAGUAGuuCGCGCCACGC---UUCGa -5'
23875 3' -55.1 NC_005262.1 + 5181 0.79 0.158318
Target:  5'- cGGCGUCG-CGGGCGCGG-GCGcGGCc -3'
miRNA:   3'- -CCGCAGUaGUUCGCGCCaCGCuUCGa -5'
23875 3' -55.1 NC_005262.1 + 40460 0.74 0.335092
Target:  5'- cGGcCGUgGUCGAGCGCGugcucGUGCGcGGCg -3'
miRNA:   3'- -CC-GCAgUAGUUCGCGC-----CACGCuUCGa -5'
23875 3' -55.1 NC_005262.1 + 59407 0.71 0.461368
Target:  5'- -cCGUCAUCAuccgucgagaucAGCGCGGUGagcuuucaGggGCUu -3'
miRNA:   3'- ccGCAGUAGU------------UCGCGCCACg-------CuuCGA- -5'
23875 3' -55.1 NC_005262.1 + 2523 0.71 0.471329
Target:  5'- cGGuCGUCAUC--GCGUGGcGUGAAGCc -3'
miRNA:   3'- -CC-GCAGUAGuuCGCGCCaCGCUUCGa -5'
23875 3' -55.1 NC_005262.1 + 41296 0.71 0.481399
Target:  5'- gGGCGaCAUCAagguauGGCGCGGcGCGAuuGCc -3'
miRNA:   3'- -CCGCaGUAGU------UCGCGCCaCGCUu-CGa -5'
23875 3' -55.1 NC_005262.1 + 10441 0.7 0.491571
Target:  5'- uGGCGcCgAUCAGguucGCGCGGUcgGCGAGGUa -3'
miRNA:   3'- -CCGCaG-UAGUU----CGCGCCA--CGCUUCGa -5'
23875 3' -55.1 NC_005262.1 + 13463 0.69 0.574914
Target:  5'- gGGCGcuUCGUCcuGCGCGGcgggcgcUGCGGccGGCUc -3'
miRNA:   3'- -CCGC--AGUAGuuCGCGCC-------ACGCU--UCGA- -5'
23875 3' -55.1 NC_005262.1 + 36464 0.69 0.58683
Target:  5'- uGGCG-CAU-GGGCGCGc-GCGAGGCUg -3'
miRNA:   3'- -CCGCaGUAgUUCGCGCcaCGCUUCGA- -5'
23875 3' -55.1 NC_005262.1 + 38512 0.69 0.597702
Target:  5'- uGGCGggccuUCAggaUCAGGuUGCGGUGCcaGAGGCg -3'
miRNA:   3'- -CCGC-----AGU---AGUUC-GCGCCACG--CUUCGa -5'
23875 3' -55.1 NC_005262.1 + 12567 0.68 0.608604
Target:  5'- cGGCGcUCGUCGAGCuGCuGcugccgccgGCGAGGCg -3'
miRNA:   3'- -CCGC-AGUAGUUCG-CGcCa--------CGCUUCGa -5'
23875 3' -55.1 NC_005262.1 + 33906 0.68 0.652316
Target:  5'- cGGCGgcccgAUCGguAGCgGCGGUGCcGAGCUc -3'
miRNA:   3'- -CCGCag---UAGU--UCG-CGCCACGcUUCGA- -5'
23875 3' -55.1 NC_005262.1 + 46883 0.68 0.663223
Target:  5'- ---uUCAUguGGUGCGGUGCGguGCg -3'
miRNA:   3'- ccgcAGUAguUCGCGCCACGCuuCGa -5'
23875 3' -55.1 NC_005262.1 + 12566 0.68 0.663223
Target:  5'- cGGCGcgCAUgagGAGCcCGGUGCGAucAGCa -3'
miRNA:   3'- -CCGCa-GUAg--UUCGcGCCACGCU--UCGa -5'
23875 3' -55.1 NC_005262.1 + 7121 0.67 0.674102
Target:  5'- uGGUGUCGUauGGUGCGGUaugguGCGAcGCc -3'
miRNA:   3'- -CCGCAGUAguUCGCGCCA-----CGCUuCGa -5'
23875 3' -55.1 NC_005262.1 + 16083 0.67 0.706459
Target:  5'- aGGCGgcgagCcgCcgcccGGCGCGGUGCuuGGCg -3'
miRNA:   3'- -CCGCa----GuaGu----UCGCGCCACGcuUCGa -5'
23875 3' -55.1 NC_005262.1 + 31892 0.67 0.706459
Target:  5'- cGGCG-CGUCGAGCG-GGUugcccGCGuAGCc -3'
miRNA:   3'- -CCGCaGUAGUUCGCgCCA-----CGCuUCGa -5'
23875 3' -55.1 NC_005262.1 + 6867 0.67 0.710731
Target:  5'- cGGCGUgCGcuucUCGAGCGCGGccuugaucucgccgGCG-AGCg -3'
miRNA:   3'- -CCGCA-GU----AGUUCGCGCCa-------------CGCuUCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.