miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 3' -53.2 NC_005262.1 + 7646 0.66 0.848053
Target:  5'- gACGCCGGCgGCGAcggcuaucUCcGCGAGCg--GCa -3'
miRNA:   3'- -UGCGGCUG-UGCU--------AGuCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 9350 0.66 0.848053
Target:  5'- uGCGCUGAUAcuucCGGUCGGCGcGCgcgGCg -3'
miRNA:   3'- -UGCGGCUGU----GCUAGUCGUuCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 28745 0.66 0.848053
Target:  5'- gACGCCGugAUGAcCgugaagaauGGCAAGCUcgGCg -3'
miRNA:   3'- -UGCGGCugUGCUaG---------UCGUUCGAcaUG- -5'
23878 3' -53.2 NC_005262.1 + 36288 0.66 0.842801
Target:  5'- cGCGgCGACGCGAacaccucggucgacuUCGGUgggGGGCcgGUGCg -3'
miRNA:   3'- -UGCgGCUGUGCU---------------AGUCG---UUCGa-CAUG- -5'
23878 3' -53.2 NC_005262.1 + 2571 0.66 0.839255
Target:  5'- uGCGCC-ACACGuauuUCAGCGucuccgGGCUG-ACc -3'
miRNA:   3'- -UGCGGcUGUGCu---AGUCGU------UCGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 61792 0.66 0.839255
Target:  5'- aGCGCCGugGCGuggagCAuGCGAGCa---- -3'
miRNA:   3'- -UGCGGCugUGCua---GU-CGUUCGacaug -5'
23878 3' -53.2 NC_005262.1 + 58765 0.66 0.839255
Target:  5'- gGCGCCGGC-CGGcgAGCAAcugccGCUGgagGCa -3'
miRNA:   3'- -UGCGGCUGuGCUagUCGUU-----CGACa--UG- -5'
23878 3' -53.2 NC_005262.1 + 53845 0.66 0.839255
Target:  5'- gGCG-CGGCGCGGaCGGCAAGCa---- -3'
miRNA:   3'- -UGCgGCUGUGCUaGUCGUUCGacaug -5'
23878 3' -53.2 NC_005262.1 + 56422 0.66 0.839255
Target:  5'- uCGCCGACAUGcgCgagGGCAaaaAGCgcGUGCu -3'
miRNA:   3'- uGCGGCUGUGCuaG---UCGU---UCGa-CAUG- -5'
23878 3' -53.2 NC_005262.1 + 31320 0.66 0.839255
Target:  5'- cCGCCGAuccCACGua-GGUAGGUUGUAa -3'
miRNA:   3'- uGCGGCU---GUGCuagUCGUUCGACAUg -5'
23878 3' -53.2 NC_005262.1 + 10546 0.66 0.839255
Target:  5'- uAUGCCGACGCGAccggccgcgcgCAGCcgcAGC-GUACc -3'
miRNA:   3'- -UGCGGCUGUGCUa----------GUCGu--UCGaCAUG- -5'
23878 3' -53.2 NC_005262.1 + 40455 0.66 0.839255
Target:  5'- cACGCCGGCcguGGUCgAGCGcguGCUcGUGCg -3'
miRNA:   3'- -UGCGGCUGug-CUAG-UCGUu--CGA-CAUG- -5'
23878 3' -53.2 NC_005262.1 + 8865 0.66 0.830232
Target:  5'- aGCGCagCGACACGccCGGCA-GCgucagGUGCg -3'
miRNA:   3'- -UGCG--GCUGUGCuaGUCGUuCGa----CAUG- -5'
23878 3' -53.2 NC_005262.1 + 33926 0.66 0.830232
Target:  5'- aGCGCCGGCGCuccucGUCGGuCAGGCcGgcCa -3'
miRNA:   3'- -UGCGGCUGUGc----UAGUC-GUUCGaCauG- -5'
23878 3' -53.2 NC_005262.1 + 62325 0.66 0.830232
Target:  5'- aGCGCCGGCA-GAcgAGCGGGCg--GCg -3'
miRNA:   3'- -UGCGGCUGUgCUagUCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 29047 0.66 0.830232
Target:  5'- gGCGCCGGCACGAcgcgcaccguguUCGGCucgaccuGC-GUGa -3'
miRNA:   3'- -UGCGGCUGUGCU------------AGUCGuu-----CGaCAUg -5'
23878 3' -53.2 NC_005262.1 + 32292 0.66 0.830232
Target:  5'- gGCGCgGGCGCGAacgUCgaGGCAGcGC-GUGCg -3'
miRNA:   3'- -UGCGgCUGUGCU---AG--UCGUU-CGaCAUG- -5'
23878 3' -53.2 NC_005262.1 + 7083 0.66 0.830232
Target:  5'- gACGCCucgGACACGuccucCAGCGAGCgc-ACg -3'
miRNA:   3'- -UGCGG---CUGUGCua---GUCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 13442 0.66 0.830232
Target:  5'- uGCGCCGcuCGCGGUCGucGCGGGCg---- -3'
miRNA:   3'- -UGCGGCu-GUGCUAGU--CGUUCGacaug -5'
23878 3' -53.2 NC_005262.1 + 51738 0.66 0.820996
Target:  5'- -aGCUGAU-CGAccagcUCGGCAAGCUGgcUGCg -3'
miRNA:   3'- ugCGGCUGuGCU-----AGUCGUUCGAC--AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.