miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 3' -53.2 NC_005262.1 + 39708 0.66 0.820996
Target:  5'- cACGUCGACAauggugugauCGcgCAGCAGGCgcaGCg -3'
miRNA:   3'- -UGCGGCUGU----------GCuaGUCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 22327 0.66 0.820996
Target:  5'- uGCGCCGGCaucugggcuGCGGUCAGCGuaacgGUAg -3'
miRNA:   3'- -UGCGGCUG---------UGCUAGUCGUucga-CAUg -5'
23878 3' -53.2 NC_005262.1 + 51164 0.66 0.811556
Target:  5'- uCGCCGA-GCGcgCAGCAGGCa---- -3'
miRNA:   3'- uGCGGCUgUGCuaGUCGUUCGacaug -5'
23878 3' -53.2 NC_005262.1 + 204 0.66 0.811556
Target:  5'- cACGCCGGCGgGggCGGCgGAGCcagACa -3'
miRNA:   3'- -UGCGGCUGUgCuaGUCG-UUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 59251 0.66 0.811556
Target:  5'- uGCGCCGcgcgcGCACGAUgaAGCcc-CUGUACa -3'
miRNA:   3'- -UGCGGC-----UGUGCUAg-UCGuucGACAUG- -5'
23878 3' -53.2 NC_005262.1 + 31886 0.66 0.811556
Target:  5'- gACGuCCGGCGCG-UCgAGCGGGUUGcccGCg -3'
miRNA:   3'- -UGC-GGCUGUGCuAG-UCGUUCGACa--UG- -5'
23878 3' -53.2 NC_005262.1 + 30664 0.66 0.811556
Target:  5'- aACGCgGACAuCGA-CAGCGGacGCUGgacgGCg -3'
miRNA:   3'- -UGCGgCUGU-GCUaGUCGUU--CGACa---UG- -5'
23878 3' -53.2 NC_005262.1 + 39201 0.66 0.811556
Target:  5'- gAUGCCGGCAacuuCGAUCcggccAGCAAGCag-GCg -3'
miRNA:   3'- -UGCGGCUGU----GCUAG-----UCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 11097 0.67 0.801922
Target:  5'- cCGCUGGCACGcUUGGCgGGGCaaugGUGCa -3'
miRNA:   3'- uGCGGCUGUGCuAGUCG-UUCGa---CAUG- -5'
23878 3' -53.2 NC_005262.1 + 28282 0.67 0.801922
Target:  5'- -gGCCGGCGCuGUCGccuaugcgcGCAAGCgcGUGCg -3'
miRNA:   3'- ugCGGCUGUGcUAGU---------CGUUCGa-CAUG- -5'
23878 3' -53.2 NC_005262.1 + 24026 0.67 0.792105
Target:  5'- cGCGUCGGgAUGGUCGGCuGGCg--GCu -3'
miRNA:   3'- -UGCGGCUgUGCUAGUCGuUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 17739 0.67 0.792105
Target:  5'- -aGUCGGCACGGUgaAGCGGGCgg-ACg -3'
miRNA:   3'- ugCGGCUGUGCUAg-UCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 2451 0.67 0.791114
Target:  5'- gGCGCCaGAagucuuuCACGAUCGGCAcgucGCUGcucgACa -3'
miRNA:   3'- -UGCGG-CU-------GUGCUAGUCGUu---CGACa---UG- -5'
23878 3' -53.2 NC_005262.1 + 46146 0.67 0.782117
Target:  5'- cGCGCUGGCggGCGAUCucuGCcuGCUGcucgGCg -3'
miRNA:   3'- -UGCGGCUG--UGCUAGu--CGuuCGACa---UG- -5'
23878 3' -53.2 NC_005262.1 + 37749 0.67 0.771969
Target:  5'- uGCGCCccugcuuGCGCGccgCGGCGAGCUGcuggGCg -3'
miRNA:   3'- -UGCGGc------UGUGCua-GUCGUUCGACa---UG- -5'
23878 3' -53.2 NC_005262.1 + 39483 0.67 0.769921
Target:  5'- cGCGCCGACcaucGCGAgaagcaucagggCGGCGAGCgucGCg -3'
miRNA:   3'- -UGCGGCUG----UGCUa-----------GUCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 2649 0.67 0.761673
Target:  5'- cCGCCGcCGCGAUCugcuGCGccAGCgcgucGUACa -3'
miRNA:   3'- uGCGGCuGUGCUAGu---CGU--UCGa----CAUG- -5'
23878 3' -53.2 NC_005262.1 + 22401 0.67 0.761673
Target:  5'- gGCGCCGACgaugaaGCGGUCGcGUAggucAGCcGUGCc -3'
miRNA:   3'- -UGCGGCUG------UGCUAGU-CGU----UCGaCAUG- -5'
23878 3' -53.2 NC_005262.1 + 26180 0.67 0.760636
Target:  5'- gGCGCgCGAUcCGAUUcaaggaaggcuggGGCGAGCcGUACa -3'
miRNA:   3'- -UGCG-GCUGuGCUAG-------------UCGUUCGaCAUG- -5'
23878 3' -53.2 NC_005262.1 + 61876 0.67 0.757515
Target:  5'- aGCGCCGA--CGAUCAGCAcgaauggaugccuGCUG-ACg -3'
miRNA:   3'- -UGCGGCUguGCUAGUCGUu------------CGACaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.