miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 3' -53.2 NC_005262.1 + 204 0.66 0.811556
Target:  5'- cACGCCGGCGgGggCGGCgGAGCcagACa -3'
miRNA:   3'- -UGCGGCUGUgCuaGUCG-UUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 2451 0.67 0.791114
Target:  5'- gGCGCCaGAagucuuuCACGAUCGGCAcgucGCUGcucgACa -3'
miRNA:   3'- -UGCGG-CU-------GUGCUAGUCGUu---CGACa---UG- -5'
23878 3' -53.2 NC_005262.1 + 2571 0.66 0.839255
Target:  5'- uGCGCC-ACACGuauuUCAGCGucuccgGGCUG-ACc -3'
miRNA:   3'- -UGCGGcUGUGCu---AGUCGU------UCGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 2649 0.67 0.761673
Target:  5'- cCGCCGcCGCGAUCugcuGCGccAGCgcgucGUACa -3'
miRNA:   3'- uGCGGCuGUGCUAGu---CGU--UCGa----CAUG- -5'
23878 3' -53.2 NC_005262.1 + 3599 0.75 0.322404
Target:  5'- uGCGCCcgGAuCAUGAcgAGCAGGCUGUACa -3'
miRNA:   3'- -UGCGG--CU-GUGCUagUCGUUCGACAUG- -5'
23878 3' -53.2 NC_005262.1 + 5046 0.71 0.553339
Target:  5'- -gGCCGGCGCcuGAUCGGCGGGCa---- -3'
miRNA:   3'- ugCGGCUGUG--CUAGUCGUUCGacaug -5'
23878 3' -53.2 NC_005262.1 + 5068 0.68 0.75019
Target:  5'- gGCGCCGAauuccucCGCGGUCAGCGccucgGGCa---- -3'
miRNA:   3'- -UGCGGCU-------GUGCUAGUCGU-----UCGacaug -5'
23878 3' -53.2 NC_005262.1 + 7083 0.66 0.830232
Target:  5'- gACGCCucgGACACGuccucCAGCGAGCgc-ACg -3'
miRNA:   3'- -UGCGG---CUGUGCua---GUCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 7646 0.66 0.848053
Target:  5'- gACGCCGGCgGCGAcggcuaucUCcGCGAGCg--GCa -3'
miRNA:   3'- -UGCGGCUG-UGCU--------AGuCGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 7726 0.71 0.564288
Target:  5'- uGCGCUGAC-CGcUCAGCGugaGGCUGaGCu -3'
miRNA:   3'- -UGCGGCUGuGCuAGUCGU---UCGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 7879 0.68 0.708383
Target:  5'- uCGCCGG-ACGGUCGacguacugcGCGAGCUGUugGCu -3'
miRNA:   3'- uGCGGCUgUGCUAGU---------CGUUCGACA--UG- -5'
23878 3' -53.2 NC_005262.1 + 8865 0.66 0.830232
Target:  5'- aGCGCagCGACACGccCGGCA-GCgucagGUGCg -3'
miRNA:   3'- -UGCG--GCUGUGCuaGUCGUuCGa----CAUG- -5'
23878 3' -53.2 NC_005262.1 + 9350 0.66 0.848053
Target:  5'- uGCGCUGAUAcuucCGGUCGGCGcGCgcgGCg -3'
miRNA:   3'- -UGCGGCUGU----GCUAGUCGUuCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 10442 0.7 0.586347
Target:  5'- gGCGCCGaucagguucGCGCGGUCGGCGAGgUagcgGCg -3'
miRNA:   3'- -UGCGGC---------UGUGCUAGUCGUUCgAca--UG- -5'
23878 3' -53.2 NC_005262.1 + 10546 0.66 0.839255
Target:  5'- uAUGCCGACGCGAccggccgcgcgCAGCcgcAGC-GUACc -3'
miRNA:   3'- -UGCGGCUGUGCUa----------GUCGu--UCGaCAUG- -5'
23878 3' -53.2 NC_005262.1 + 10780 0.68 0.730013
Target:  5'- cGCGCCGggcGCGCGGUacugcugcGCGAGCUGccGCg -3'
miRNA:   3'- -UGCGGC---UGUGCUAgu------CGUUCGACa-UG- -5'
23878 3' -53.2 NC_005262.1 + 11097 0.67 0.801922
Target:  5'- cCGCUGGCACGcUUGGCgGGGCaaugGUGCa -3'
miRNA:   3'- uGCGGCUGUGCuAGUCG-UUCGa---CAUG- -5'
23878 3' -53.2 NC_005262.1 + 11651 0.71 0.575294
Target:  5'- gGCGCCGGCGuCGcgCuGCAcGCUGgccgGCa -3'
miRNA:   3'- -UGCGGCUGU-GCuaGuCGUuCGACa---UG- -5'
23878 3' -53.2 NC_005262.1 + 13442 0.66 0.830232
Target:  5'- uGCGCCGcuCGCGGUCGucGCGGGCg---- -3'
miRNA:   3'- -UGCGGCu-GUGCUAGU--CGUUCGacaug -5'
23878 3' -53.2 NC_005262.1 + 13797 0.73 0.428832
Target:  5'- gGCGCCGGCGCGGcuucaUCGGCGggAGCgg-GCg -3'
miRNA:   3'- -UGCGGCUGUGCU-----AGUCGU--UCGacaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.