miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 3' -53.2 NC_005262.1 + 17499 0.69 0.675392
Target:  5'- cGCGCgCGACGCgucGAUCGGCAGcCUG-ACg -3'
miRNA:   3'- -UGCG-GCUGUG---CUAGUCGUUcGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 24884 0.71 0.553339
Target:  5'- cCGCCGGCGCGugacaGGCGAGCUcgGCc -3'
miRNA:   3'- uGCGGCUGUGCuag--UCGUUCGAcaUG- -5'
23878 3' -53.2 NC_005262.1 + 59000 0.71 0.553339
Target:  5'- cGCGCCGuCGCGcuucgaccGUCuGCAAGCcgcgGUGCa -3'
miRNA:   3'- -UGCGGCuGUGC--------UAGuCGUUCGa---CAUG- -5'
23878 3' -53.2 NC_005262.1 + 7726 0.71 0.564288
Target:  5'- uGCGCUGAC-CGcUCAGCGugaGGCUGaGCu -3'
miRNA:   3'- -UGCGGCUGuGCuAGUCGU---UCGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 61143 0.71 0.564288
Target:  5'- cGCGCUGGCGCagcaGAUCgcggcggcgGGCGAGCUG-ACg -3'
miRNA:   3'- -UGCGGCUGUG----CUAG---------UCGUUCGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 11651 0.71 0.575294
Target:  5'- gGCGCCGGCGuCGcgCuGCAcGCUGgccgGCa -3'
miRNA:   3'- -UGCGGCUGU-GCuaGuCGUuCGACa---UG- -5'
23878 3' -53.2 NC_005262.1 + 43755 0.7 0.586347
Target:  5'- gUGCUGAcCACGAaguucgggcUCAGCGAGCgcguaGUGCa -3'
miRNA:   3'- uGCGGCU-GUGCU---------AGUCGUUCGa----CAUG- -5'
23878 3' -53.2 NC_005262.1 + 33903 0.7 0.59744
Target:  5'- -gGCCGGCGgccCGAUCGGUAgcGGCgGUGCc -3'
miRNA:   3'- ugCGGCUGU---GCUAGUCGU--UCGaCAUG- -5'
23878 3' -53.2 NC_005262.1 + 53063 0.7 0.59744
Target:  5'- cGCGCUGACcggcGCGAUC-GCGAagcuGCUGUAUc -3'
miRNA:   3'- -UGCGGCUG----UGCUAGuCGUU----CGACAUG- -5'
23878 3' -53.2 NC_005262.1 + 5046 0.71 0.553339
Target:  5'- -gGCCGGCGCcuGAUCGGCGGGCa---- -3'
miRNA:   3'- ugCGGCUGUG--CUAGUCGUUCGacaug -5'
23878 3' -53.2 NC_005262.1 + 60832 0.71 0.53164
Target:  5'- uGCGCCGGCcuacGCGAUCGGCGuGGCgaugGCc -3'
miRNA:   3'- -UGCGGCUG----UGCUAGUCGU-UCGaca-UG- -5'
23878 3' -53.2 NC_005262.1 + 25732 0.71 0.53164
Target:  5'- -gGCCGAgGCGAUCGcGCAGGCcg-GCa -3'
miRNA:   3'- ugCGGCUgUGCUAGU-CGUUCGacaUG- -5'
23878 3' -53.2 NC_005262.1 + 51248 0.78 0.236976
Target:  5'- cGCGCCGGCuACGGUaaggaCGGCAAGCUGaACc -3'
miRNA:   3'- -UGCGGCUG-UGCUA-----GUCGUUCGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 55668 0.78 0.242665
Target:  5'- cACGCCGgucacgaACACGAUgGGCGAGCUcUACa -3'
miRNA:   3'- -UGCGGC-------UGUGCUAgUCGUUCGAcAUG- -5'
23878 3' -53.2 NC_005262.1 + 60214 0.76 0.28426
Target:  5'- -gGCCGGCGaGGUCGGCAAGCUGc-- -3'
miRNA:   3'- ugCGGCUGUgCUAGUCGUUCGACaug -5'
23878 3' -53.2 NC_005262.1 + 3599 0.75 0.322404
Target:  5'- uGCGCCcgGAuCAUGAcgAGCAGGCUGUACa -3'
miRNA:   3'- -UGCGG--CU-GUGCUagUCGUUCGACAUG- -5'
23878 3' -53.2 NC_005262.1 + 63059 0.75 0.330477
Target:  5'- uGCGCCGGCACG-UCAucGCGGGCgaGUAUg -3'
miRNA:   3'- -UGCGGCUGUGCuAGU--CGUUCGa-CAUG- -5'
23878 3' -53.2 NC_005262.1 + 56135 0.73 0.428832
Target:  5'- cGCGCCGAgCGaccCGAaCAGCAAGCUGaACc -3'
miRNA:   3'- -UGCGGCU-GU---GCUaGUCGUUCGACaUG- -5'
23878 3' -53.2 NC_005262.1 + 17929 0.72 0.468639
Target:  5'- gGCGCCGACGCcaaCGGCGAGCagGUcGCg -3'
miRNA:   3'- -UGCGGCUGUGcuaGUCGUUCGa-CA-UG- -5'
23878 3' -53.2 NC_005262.1 + 43138 0.72 0.483015
Target:  5'- -gGCgGACGCGAcguUCuacgacaucaccgagGGCAAGCUGUACc -3'
miRNA:   3'- ugCGgCUGUGCU---AG---------------UCGUUCGACAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.