miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 5' -57.7 NC_005262.1 + 57756 0.66 0.655258
Target:  5'- uCGAgGGCAuuGCGCGCaauggCGugCUGGUUGg -3'
miRNA:   3'- -GCUgCCGU--CGUGCGa----GCugGACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 24205 0.66 0.655258
Target:  5'- aGGCGGCAGCcgcgacgcuGCGC-CGGCaCgccGAUUGg -3'
miRNA:   3'- gCUGCCGUCG---------UGCGaGCUG-Ga--CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 41653 0.66 0.644566
Target:  5'- gCGAUgcgGGCAGC-CGCggCGGCCaGACg- -3'
miRNA:   3'- -GCUG---CCGUCGuGCGa-GCUGGaCUGac -5'
23878 5' -57.7 NC_005262.1 + 5135 0.66 0.643496
Target:  5'- gCGACgGGCGGCGCugauccuGCUCGGCgcgCUGAUc- -3'
miRNA:   3'- -GCUG-CCGUCGUG-------CGAGCUG---GACUGac -5'
23878 5' -57.7 NC_005262.1 + 27311 0.66 0.638145
Target:  5'- aGAuCGGCAGCAucauccacgaccaccUGCUCGACCUc---- -3'
miRNA:   3'- gCU-GCCGUCGU---------------GCGAGCUGGAcugac -5'
23878 5' -57.7 NC_005262.1 + 17406 0.66 0.633863
Target:  5'- cCGACGa-GGCGCGCcuguUCGGCCUuGAUUGc -3'
miRNA:   3'- -GCUGCcgUCGUGCG----AGCUGGA-CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 34949 0.66 0.623159
Target:  5'- uCGGCGGCAaguucgacGCgGCGCUCGGCCg----- -3'
miRNA:   3'- -GCUGCCGU--------CG-UGCGAGCUGGacugac -5'
23878 5' -57.7 NC_005262.1 + 4579 0.66 0.623159
Target:  5'- -aGCGGCGGCGCuGCUCgGGCgUGAg-- -3'
miRNA:   3'- gcUGCCGUCGUG-CGAG-CUGgACUgac -5'
23878 5' -57.7 NC_005262.1 + 13677 0.66 0.623159
Target:  5'- --uCGGuCAGCgaGCGCUCGGCC-GGCUu -3'
miRNA:   3'- gcuGCC-GUCG--UGCGAGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 14349 0.66 0.623159
Target:  5'- gCGACGuGCuuGCGCGCgUCGA-CUGGCg- -3'
miRNA:   3'- -GCUGC-CGu-CGUGCG-AGCUgGACUGac -5'
23878 5' -57.7 NC_005262.1 + 34046 0.66 0.612462
Target:  5'- uCGAuCGGCAGU-UGCUCGAcgaccagaacCCgGACUGg -3'
miRNA:   3'- -GCU-GCCGUCGuGCGAGCU----------GGaCUGAC- -5'
23878 5' -57.7 NC_005262.1 + 32786 0.66 0.612462
Target:  5'- uCGAcacCGGCGGCGCGC-CGGCCa----- -3'
miRNA:   3'- -GCU---GCCGUCGUGCGaGCUGGacugac -5'
23878 5' -57.7 NC_005262.1 + 30768 0.66 0.601781
Target:  5'- gGGCGGUacgucagcaucaGGCGCaGCUUGGCgUUGGCUGc -3'
miRNA:   3'- gCUGCCG------------UCGUG-CGAGCUG-GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 58563 0.66 0.601781
Target:  5'- aGGCGGCgagaagcugaucGGCACGC-CGGCauggaaugGGCUGa -3'
miRNA:   3'- gCUGCCG------------UCGUGCGaGCUGga------CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 9363 0.67 0.591125
Target:  5'- cCGGuCGGC-GCGCGCggCGGCCUG-Cg- -3'
miRNA:   3'- -GCU-GCCGuCGUGCGa-GCUGGACuGac -5'
23878 5' -57.7 NC_005262.1 + 12956 0.67 0.580501
Target:  5'- gCGACGGCAucGCcgacCGCUCGGCgUcGACg- -3'
miRNA:   3'- -GCUGCCGU--CGu---GCGAGCUGgA-CUGac -5'
23878 5' -57.7 NC_005262.1 + 21582 0.67 0.569918
Target:  5'- gGGCGGCuacggcuacAGCAagaaGCUCGcggcgaacCCUGACUGc -3'
miRNA:   3'- gCUGCCG---------UCGUg---CGAGCu-------GGACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 50939 0.67 0.569918
Target:  5'- -cACGGCAGCGCgaaGCUCGGCaC-GACg- -3'
miRNA:   3'- gcUGCCGUCGUG---CGAGCUG-GaCUGac -5'
23878 5' -57.7 NC_005262.1 + 31121 0.67 0.569918
Target:  5'- gCGGcCGGCAGCGCGaaCUCGAagcguucgcagaCCUGAUc- -3'
miRNA:   3'- -GCU-GCCGUCGUGC--GAGCU------------GGACUGac -5'
23878 5' -57.7 NC_005262.1 + 55337 0.67 0.559383
Target:  5'- uCGACGaGUggaaAGcCGCGCUCGACgaGACg- -3'
miRNA:   3'- -GCUGC-CG----UC-GUGCGAGCUGgaCUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.