miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 5' -57.7 NC_005262.1 + 57412 1.09 0.000716
Target:  5'- aCGACGGCAGCACGCUCGACCUGACUGa -3'
miRNA:   3'- -GCUGCCGUCGUGCGAGCUGGACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 48500 0.82 0.066563
Target:  5'- gCGACGGCAGCcgcagguaacagcGCGCUCGACCUG-Ca- -3'
miRNA:   3'- -GCUGCCGUCG-------------UGCGAGCUGGACuGac -5'
23878 5' -57.7 NC_005262.1 + 5074 0.79 0.110095
Target:  5'- gCGGCGGCGGCGCGUgCGACC-GGCUc -3'
miRNA:   3'- -GCUGCCGUCGUGCGaGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 11583 0.76 0.165127
Target:  5'- cCGGCGGCGGCcaGCGCUCGAgC-GACUu -3'
miRNA:   3'- -GCUGCCGUCG--UGCGAGCUgGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 15704 0.76 0.174108
Target:  5'- gGACGaGCAGCgcuauGCGCUCGACgUGGCg- -3'
miRNA:   3'- gCUGC-CGUCG-----UGCGAGCUGgACUGac -5'
23878 5' -57.7 NC_005262.1 + 46799 0.75 0.203704
Target:  5'- aCGACGaGC-GCGCGCUCGGCCggcGGCa- -3'
miRNA:   3'- -GCUGC-CGuCGUGCGAGCUGGa--CUGac -5'
23878 5' -57.7 NC_005262.1 + 20582 0.74 0.220079
Target:  5'- cCGGCGaGCAGCGCGCggCGcGCCgcagGGCUGu -3'
miRNA:   3'- -GCUGC-CGUCGUGCGa-GC-UGGa---CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 4836 0.73 0.276013
Target:  5'- cCGGCGGcCGGCugGUUCGACU--GCUGc -3'
miRNA:   3'- -GCUGCC-GUCGugCGAGCUGGacUGAC- -5'
23878 5' -57.7 NC_005262.1 + 7534 0.72 0.289891
Target:  5'- uCGGCGGCgcgucGGCGCGCUCGAC--GACa- -3'
miRNA:   3'- -GCUGCCG-----UCGUGCGAGCUGgaCUGac -5'
23878 5' -57.7 NC_005262.1 + 51224 0.72 0.311725
Target:  5'- cCGGCGGCAGCAgcaGCUCGACgaG-Cg- -3'
miRNA:   3'- -GCUGCCGUCGUg--CGAGCUGgaCuGac -5'
23878 5' -57.7 NC_005262.1 + 59401 0.71 0.326961
Target:  5'- aGGCGcGCGacaucgcacgcGCaACGCUCGACCUGaaGCUGg -3'
miRNA:   3'- gCUGC-CGU-----------CG-UGCGAGCUGGAC--UGAC- -5'
23878 5' -57.7 NC_005262.1 + 45874 0.71 0.350838
Target:  5'- gGACGGCAuCACGCUCGugauCCgcgGGCa- -3'
miRNA:   3'- gCUGCCGUcGUGCGAGCu---GGa--CUGac -5'
23878 5' -57.7 NC_005262.1 + 11090 0.71 0.359067
Target:  5'- gGGCGGCccgcuGGCACGCUUGGCggGGCa- -3'
miRNA:   3'- gCUGCCG-----UCGUGCGAGCUGgaCUGac -5'
23878 5' -57.7 NC_005262.1 + 53812 0.71 0.359067
Target:  5'- uCGACaGCGGCACGggcaUCGAgCUGACg- -3'
miRNA:   3'- -GCUGcCGUCGUGCg---AGCUgGACUGac -5'
23878 5' -57.7 NC_005262.1 + 40746 0.7 0.384555
Target:  5'- gGGCGGCGGCGCGUUccaaaucaaCGGCUauGCUGg -3'
miRNA:   3'- gCUGCCGUCGUGCGA---------GCUGGacUGAC- -5'
23878 5' -57.7 NC_005262.1 + 63288 0.7 0.384555
Target:  5'- uGACGGCcggcuGCugGCUCGGCgUcGACg- -3'
miRNA:   3'- gCUGCCGu----CGugCGAGCUGgA-CUGac -5'
23878 5' -57.7 NC_005262.1 + 47719 0.7 0.393313
Target:  5'- gGGCGGCGGCuCGC-CG-CCUGuauCUGg -3'
miRNA:   3'- gCUGCCGUCGuGCGaGCuGGACu--GAC- -5'
23878 5' -57.7 NC_005262.1 + 54843 0.7 0.393313
Target:  5'- cCGACacGCAGCGCGC-CGACC-GGCUc -3'
miRNA:   3'- -GCUGc-CGUCGUGCGaGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 35231 0.7 0.4022
Target:  5'- aGGuCGGCGGCGCGaUCGGCagcGGCUGg -3'
miRNA:   3'- gCU-GCCGUCGUGCgAGCUGga-CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 13223 0.7 0.411213
Target:  5'- -aGCGGCAGCGgGCUCGGgCUG-Cg- -3'
miRNA:   3'- gcUGCCGUCGUgCGAGCUgGACuGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.