Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23878 | 5' | -57.7 | NC_005262.1 | + | 50939 | 0.67 | 0.569918 |
Target: 5'- -cACGGCAGCGCgaaGCUCGGCaC-GACg- -3' miRNA: 3'- gcUGCCGUCGUG---CGAGCUG-GaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 21582 | 0.67 | 0.569918 |
Target: 5'- gGGCGGCuacggcuacAGCAagaaGCUCGcggcgaacCCUGACUGc -3' miRNA: 3'- gCUGCCG---------UCGUg---CGAGCu-------GGACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 12956 | 0.67 | 0.580501 |
Target: 5'- gCGACGGCAucGCcgacCGCUCGGCgUcGACg- -3' miRNA: 3'- -GCUGCCGU--CGu---GCGAGCUGgA-CUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 9363 | 0.67 | 0.591125 |
Target: 5'- cCGGuCGGC-GCGCGCggCGGCCUG-Cg- -3' miRNA: 3'- -GCU-GCCGuCGUGCGa-GCUGGACuGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 30768 | 0.66 | 0.601781 |
Target: 5'- gGGCGGUacgucagcaucaGGCGCaGCUUGGCgUUGGCUGc -3' miRNA: 3'- gCUGCCG------------UCGUG-CGAGCUG-GACUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 58563 | 0.66 | 0.601781 |
Target: 5'- aGGCGGCgagaagcugaucGGCACGC-CGGCauggaaugGGCUGa -3' miRNA: 3'- gCUGCCG------------UCGUGCGaGCUGga------CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 32786 | 0.66 | 0.612462 |
Target: 5'- uCGAcacCGGCGGCGCGC-CGGCCa----- -3' miRNA: 3'- -GCU---GCCGUCGUGCGaGCUGGacugac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 34046 | 0.66 | 0.612462 |
Target: 5'- uCGAuCGGCAGU-UGCUCGAcgaccagaacCCgGACUGg -3' miRNA: 3'- -GCU-GCCGUCGuGCGAGCU----------GGaCUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 4579 | 0.66 | 0.623159 |
Target: 5'- -aGCGGCGGCGCuGCUCgGGCgUGAg-- -3' miRNA: 3'- gcUGCCGUCGUG-CGAG-CUGgACUgac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 14349 | 0.66 | 0.623159 |
Target: 5'- gCGACGuGCuuGCGCGCgUCGA-CUGGCg- -3' miRNA: 3'- -GCUGC-CGu-CGUGCG-AGCUgGACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 34949 | 0.66 | 0.623159 |
Target: 5'- uCGGCGGCAaguucgacGCgGCGCUCGGCCg----- -3' miRNA: 3'- -GCUGCCGU--------CG-UGCGAGCUGGacugac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 13677 | 0.66 | 0.623159 |
Target: 5'- --uCGGuCAGCgaGCGCUCGGCC-GGCUu -3' miRNA: 3'- gcuGCC-GUCG--UGCGAGCUGGaCUGAc -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 17406 | 0.66 | 0.633863 |
Target: 5'- cCGACGa-GGCGCGCcuguUCGGCCUuGAUUGc -3' miRNA: 3'- -GCUGCcgUCGUGCG----AGCUGGA-CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 27311 | 0.66 | 0.638145 |
Target: 5'- aGAuCGGCAGCAucauccacgaccaccUGCUCGACCUc---- -3' miRNA: 3'- gCU-GCCGUCGU---------------GCGAGCUGGAcugac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 5135 | 0.66 | 0.643496 |
Target: 5'- gCGACgGGCGGCGCugauccuGCUCGGCgcgCUGAUc- -3' miRNA: 3'- -GCUG-CCGUCGUG-------CGAGCUG---GACUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 41653 | 0.66 | 0.644566 |
Target: 5'- gCGAUgcgGGCAGC-CGCggCGGCCaGACg- -3' miRNA: 3'- -GCUG---CCGUCGuGCGa-GCUGGaCUGac -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 24205 | 0.66 | 0.655258 |
Target: 5'- aGGCGGCAGCcgcgacgcuGCGC-CGGCaCgccGAUUGg -3' miRNA: 3'- gCUGCCGUCG---------UGCGaGCUG-Ga--CUGAC- -5' |
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23878 | 5' | -57.7 | NC_005262.1 | + | 57756 | 0.66 | 0.655258 |
Target: 5'- uCGAgGGCAuuGCGCGCaauggCGugCUGGUUGg -3' miRNA: 3'- -GCUgCCGU--CGUGCGa----GCugGACUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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