miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 5' -57.7 NC_005262.1 + 42247 0.67 0.559383
Target:  5'- aGGCGGCGGCAUcuGCUUcagGACCgcgaGCUGc -3'
miRNA:   3'- gCUGCCGUCGUG--CGAG---CUGGac--UGAC- -5'
23878 5' -57.7 NC_005262.1 + 52957 0.67 0.538486
Target:  5'- uCGcCGGCGGCAaggUGCUCGAgCCgGGCa- -3'
miRNA:   3'- -GCuGCCGUCGU---GCGAGCU-GGaCUGac -5'
23878 5' -57.7 NC_005262.1 + 41262 0.67 0.538486
Target:  5'- uGACGGCGGCgaucACGCagauUCGGCCgcgcgugGGCg- -3'
miRNA:   3'- gCUGCCGUCG----UGCG----AGCUGGa------CUGac -5'
23878 5' -57.7 NC_005262.1 + 30572 0.67 0.538486
Target:  5'- aCGACGGCAGCAaGgaCGGCaaGACc- -3'
miRNA:   3'- -GCUGCCGUCGUgCgaGCUGgaCUGac -5'
23878 5' -57.7 NC_005262.1 + 49683 0.68 0.528136
Target:  5'- gGuCGGCGGCGCGCgCaACCUGAa-- -3'
miRNA:   3'- gCuGCCGUCGUGCGaGcUGGACUgac -5'
23878 5' -57.7 NC_005262.1 + 2736 0.68 0.528136
Target:  5'- uCGACGGC-GUAUccgGCaCGAUCUGGCUGc -3'
miRNA:   3'- -GCUGCCGuCGUG---CGaGCUGGACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 30384 0.68 0.497559
Target:  5'- aCGACGGCGGgaACGUggcgccugCGACCUuGAgCUGg -3'
miRNA:   3'- -GCUGCCGUCg-UGCGa-------GCUGGA-CU-GAC- -5'
23878 5' -57.7 NC_005262.1 + 6901 0.68 0.497559
Target:  5'- cCGGCGaGCGuguuGuCGCGCUCGACCUG-Cg- -3'
miRNA:   3'- -GCUGC-CGU----C-GUGCGAGCUGGACuGac -5'
23878 5' -57.7 NC_005262.1 + 3692 0.68 0.487543
Target:  5'- aCGACGGUgauGCcgGCGC-CGACaauCUGACUGa -3'
miRNA:   3'- -GCUGCCGu--CG--UGCGaGCUG---GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 43443 0.68 0.487543
Target:  5'- uCGACGGCGaCGCGCUUGugCgGAUc- -3'
miRNA:   3'- -GCUGCCGUcGUGCGAGCugGaCUGac -5'
23878 5' -57.7 NC_005262.1 + 43076 0.68 0.487543
Target:  5'- -cGCGGCAGCuucaucaUCGACCUGACc- -3'
miRNA:   3'- gcUGCCGUCGugcg---AGCUGGACUGac -5'
23878 5' -57.7 NC_005262.1 + 12550 0.68 0.477622
Target:  5'- gCGGCGGCAGguCGCggcggcgcucgUCGAgCUGcuGCUGc -3'
miRNA:   3'- -GCUGCCGUCguGCG-----------AGCUgGAC--UGAC- -5'
23878 5' -57.7 NC_005262.1 + 23453 0.69 0.467802
Target:  5'- aCGACuGGC-GCAUGCgCGGCCUGgacgaaugGCUGg -3'
miRNA:   3'- -GCUG-CCGuCGUGCGaGCUGGAC--------UGAC- -5'
23878 5' -57.7 NC_005262.1 + 31073 0.69 0.458087
Target:  5'- uCGGcCGGCAGCACGC-CGAgCUcGAUg- -3'
miRNA:   3'- -GCU-GCCGUCGUGCGaGCUgGA-CUGac -5'
23878 5' -57.7 NC_005262.1 + 33183 0.69 0.448481
Target:  5'- uCGGCGGCGGCucgaucuucGCGCccuucagCGGCUUGGCg- -3'
miRNA:   3'- -GCUGCCGUCG---------UGCGa------GCUGGACUGac -5'
23878 5' -57.7 NC_005262.1 + 17089 0.69 0.438987
Target:  5'- gCGcCGGCuuguccacuGCGCGCgCGGCgCUGACUGc -3'
miRNA:   3'- -GCuGCCGu--------CGUGCGaGCUG-GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 45212 0.69 0.429609
Target:  5'- aGGCGGCAuguccGcCGgGCUCGGCCUGAa-- -3'
miRNA:   3'- gCUGCCGU-----C-GUgCGAGCUGGACUgac -5'
23878 5' -57.7 NC_005262.1 + 29608 0.7 0.411213
Target:  5'- gGGCGGCAGCucggaaugcaGCGuCUCGACCUucgugccggcGACg- -3'
miRNA:   3'- gCUGCCGUCG----------UGC-GAGCUGGA----------CUGac -5'
23878 5' -57.7 NC_005262.1 + 13223 0.7 0.411213
Target:  5'- -aGCGGCAGCGgGCUCGGgCUG-Cg- -3'
miRNA:   3'- gcUGCCGUCGUgCGAGCUgGACuGac -5'
23878 5' -57.7 NC_005262.1 + 35231 0.7 0.4022
Target:  5'- aGGuCGGCGGCGCGaUCGGCagcGGCUGg -3'
miRNA:   3'- gCU-GCCGUCGUGCgAGCUGga-CUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.