miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23878 5' -57.7 NC_005262.1 + 2736 0.68 0.528136
Target:  5'- uCGACGGC-GUAUccgGCaCGAUCUGGCUGc -3'
miRNA:   3'- -GCUGCCGuCGUG---CGaGCUGGACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 3692 0.68 0.487543
Target:  5'- aCGACGGUgauGCcgGCGC-CGACaauCUGACUGa -3'
miRNA:   3'- -GCUGCCGu--CG--UGCGaGCUG---GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 4579 0.66 0.623159
Target:  5'- -aGCGGCGGCGCuGCUCgGGCgUGAg-- -3'
miRNA:   3'- gcUGCCGUCGUG-CGAG-CUGgACUgac -5'
23878 5' -57.7 NC_005262.1 + 4836 0.73 0.276013
Target:  5'- cCGGCGGcCGGCugGUUCGACU--GCUGc -3'
miRNA:   3'- -GCUGCC-GUCGugCGAGCUGGacUGAC- -5'
23878 5' -57.7 NC_005262.1 + 5074 0.79 0.110095
Target:  5'- gCGGCGGCGGCGCGUgCGACC-GGCUc -3'
miRNA:   3'- -GCUGCCGUCGUGCGaGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 5135 0.66 0.643496
Target:  5'- gCGACgGGCGGCGCugauccuGCUCGGCgcgCUGAUc- -3'
miRNA:   3'- -GCUG-CCGUCGUG-------CGAGCUG---GACUGac -5'
23878 5' -57.7 NC_005262.1 + 6901 0.68 0.497559
Target:  5'- cCGGCGaGCGuguuGuCGCGCUCGACCUG-Cg- -3'
miRNA:   3'- -GCUGC-CGU----C-GUGCGAGCUGGACuGac -5'
23878 5' -57.7 NC_005262.1 + 7534 0.72 0.289891
Target:  5'- uCGGCGGCgcgucGGCGCGCUCGAC--GACa- -3'
miRNA:   3'- -GCUGCCG-----UCGUGCGAGCUGgaCUGac -5'
23878 5' -57.7 NC_005262.1 + 9363 0.67 0.591125
Target:  5'- cCGGuCGGC-GCGCGCggCGGCCUG-Cg- -3'
miRNA:   3'- -GCU-GCCGuCGUGCGa-GCUGGACuGac -5'
23878 5' -57.7 NC_005262.1 + 11090 0.71 0.359067
Target:  5'- gGGCGGCccgcuGGCACGCUUGGCggGGCa- -3'
miRNA:   3'- gCUGCCG-----UCGUGCGAGCUGgaCUGac -5'
23878 5' -57.7 NC_005262.1 + 11583 0.76 0.165127
Target:  5'- cCGGCGGCGGCcaGCGCUCGAgC-GACUu -3'
miRNA:   3'- -GCUGCCGUCG--UGCGAGCUgGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 12550 0.68 0.477622
Target:  5'- gCGGCGGCAGguCGCggcggcgcucgUCGAgCUGcuGCUGc -3'
miRNA:   3'- -GCUGCCGUCguGCG-----------AGCUgGAC--UGAC- -5'
23878 5' -57.7 NC_005262.1 + 12956 0.67 0.580501
Target:  5'- gCGACGGCAucGCcgacCGCUCGGCgUcGACg- -3'
miRNA:   3'- -GCUGCCGU--CGu---GCGAGCUGgA-CUGac -5'
23878 5' -57.7 NC_005262.1 + 13223 0.7 0.411213
Target:  5'- -aGCGGCAGCGgGCUCGGgCUG-Cg- -3'
miRNA:   3'- gcUGCCGUCGUgCGAGCUgGACuGac -5'
23878 5' -57.7 NC_005262.1 + 13677 0.66 0.623159
Target:  5'- --uCGGuCAGCgaGCGCUCGGCC-GGCUu -3'
miRNA:   3'- gcuGCC-GUCG--UGCGAGCUGGaCUGAc -5'
23878 5' -57.7 NC_005262.1 + 14349 0.66 0.623159
Target:  5'- gCGACGuGCuuGCGCGCgUCGA-CUGGCg- -3'
miRNA:   3'- -GCUGC-CGu-CGUGCG-AGCUgGACUGac -5'
23878 5' -57.7 NC_005262.1 + 15704 0.76 0.174108
Target:  5'- gGACGaGCAGCgcuauGCGCUCGACgUGGCg- -3'
miRNA:   3'- gCUGC-CGUCG-----UGCGAGCUGgACUGac -5'
23878 5' -57.7 NC_005262.1 + 17089 0.69 0.438987
Target:  5'- gCGcCGGCuuguccacuGCGCGCgCGGCgCUGACUGc -3'
miRNA:   3'- -GCuGCCGu--------CGUGCGaGCUG-GACUGAC- -5'
23878 5' -57.7 NC_005262.1 + 17406 0.66 0.633863
Target:  5'- cCGACGa-GGCGCGCcuguUCGGCCUuGAUUGc -3'
miRNA:   3'- -GCUGCcgUCGUGCG----AGCUGGA-CUGAC- -5'
23878 5' -57.7 NC_005262.1 + 20582 0.74 0.220079
Target:  5'- cCGGCGaGCAGCGCGCggCGcGCCgcagGGCUGu -3'
miRNA:   3'- -GCUGC-CGUCGUGCGa-GC-UGGa---CUGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.